Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11707 165 1e-35 seq3944 82.4 9e-11 >seq11707 Length=330502 Score = 165 bits (182), Expect = 1e-35 Identities = 382/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || |||| ||||||||||||||| |||||||| | ||| ||| |||||| Sbjct 116827 TACTCACCCACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCATC 116768 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTG---GCACTCCAATCTGTTTGAGGAGA 129844 ||||||| ||||| |||| || | || |||| |||| | | ||| Sbjct 116767 CAATCAAACGGGTT--TTGAACACCGTACACCTTCCCGCAC-CCAAGCGCACCCAAGAGC 116711 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || || | |||| |||| ||||||| |||| | || |||||| |||| | | Sbjct 116710 CGGTCGGCGACGAACTCGATGTACTGGCTCATCAACGCGCCGTTCATCCCGACCAACGCA 116651 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || |||||||| | | ||| || |||| || ||||| || | || ||||| || Sbjct 116650 CACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTTGCGGACGATAGCC 116591 Query 129965 T-GAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | || | | |||| || ||| | | || | || | |||| ||| || | Sbjct 116590 TTGACTCG-CTCCTCGCTCAGCT-TCTTCCTCAGGAGGGAGTAGAGAAGGCAGGCGAAAT 116533 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| || ||||| || || || |||||| || || ||||| | Sbjct 116532 CGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATTA 116473 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 ||||||||||| | ||||||||| ||||| || || ||||||||||||||||| | Sbjct 116472 ACCCCCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCCTCGA 116413 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTC 130201 | || ||||| || | || ||||| |||||||| ||| || ||| | ||| Sbjct 116412 CGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC----CATCGATCCAGCGG 116357 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 | |||||||| ||||| || | || || |||||||| | ||| || | ||||| Sbjct 116356 AGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGGAAGAGGCGG 116297 Query 130262 TTCTTTTCTGATGGATCTTTGATGTA 130287 |||| || | | ||| |||||||| Sbjct 116296 GTCTTCTCAGCGGAATCCTTGATGTA 116271 >seq3944 Length=1040735 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/277 (67%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| |||||||| || || || || || || | ||||||||| || Sbjct 998911 AAACCCATCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCACC 998970 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || ||||| ||||| ||||| ||||| || || || Sbjct 998971 TCCAAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 999030 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || | ||| || || || || | ||| | ||||||| || || || |||| Sbjct 999031 CGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTCGACGCCCCAACTCCCA 999089 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||||||||| | | || | || || ||| || || | ||| || | Sbjct 999090 CAAACAACTCCACAAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCCGG 999149 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | || ||||| | || ||||| || || ||||| Sbjct 999150 CCACCGCCCGGGCCAAAAGAGTCTTTCCGGTACCTGG 999186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618193229497560