Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11707 134 2e-26 seq3944 125 8e-24 seq6949 102 1e-16 >seq11707 Length=330502 Score = 134 bits (148), Expect = 2e-26 Identities = 188/262 (72%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 || || |||||| |||||||||| | ||||| | || ||| | || || || || Sbjct 116271 TACATCAAGGATTCCGCTGAGAAGACCCGCCTCTTCCACGCAATCGACACCGTCCCTTGC 116330 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT-TCCTTTGC 94802 ||| ||||| || | ||||| | ||| | ||| || || |||||||| Sbjct 116331 ATTGCCAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGATG----GTTCCGAGTCCTTTGC 116386 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||||| || |||| || || || || ||||| ||||||||||| || |||||| || Sbjct 116387 CGAGCGCATCATCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGTGC 116446 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| |||||||||||||| || | ||||| || ||| ||||||||||||||| || Sbjct 116447 CATTTTCTGGCTCAAGAAGCGGGGGTTAATGCCGGGACTCACCTTCTCCAACGAGCTGAT 116506 Query 94923 CTCTCGTGACGAGGGACTCCAC 94944 ||| || |||||||| || ||| Sbjct 116507 CTCGCGAGACGAGGGCCTGCAC 116528 >seq3944 Length=1040735 Score = 125 bits (138), Expect = 8e-24 Identities = 257/376 (68%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| || || | || || || || |||||| |||||| | |||| | || || Sbjct 998818 CTGACGGTCGAACCTCCCCGGCCGCAGCAGCGCGGAATCAAGAACATCAGGCCTGTTAGT 998877 Query 9580 CGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9637 ||||| | |||| | ||| | || | | ||| ||||||||||| ||||| || Sbjct 998878 GGCGGCCAACACAATGACACCCGAATTCCCCGA--AAACCCATCCATCTCCGTCAAGAGC 998935 Query 9638 TGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTT 9697 ||||||||||| || || | ||||||||| | | |||||| | | ||| | Sbjct 998936 TGGTTAATAGTCTGCTCTCTCTCATCATTCCCACCTCCAAGACCAGCCCCTCTCTGCCTC 998995 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--T 9755 |||||||||||||||||||||||||| || ||||| || ||||| || || | Sbjct 998996 CCCACGGCATCAATCTCATCAATGAACACAATGCACGG--CGCTTTCGACTTCGCCTTCT 999053 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCC--ACACCAACAAACATCTCCACAAAGTTTGC 9813 | || | ||||| ||| || | ||||| || || ||||||| ||||||||| | | Sbjct 999054 CGAACAAATCCC--TCACTCTCGACGCCCCAACTCCCACAAACAACTCCACAAACTCCGA 999111 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 || | || || ||| || || | ||| || || | || ||||| | |||||| Sbjct 999112 AGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCCGGCCACCGCCCGGGCCAAAAGAGT 999171 Query 9874 CTTACCCGTACCTGGC 9889 ||| || ||||||||| Sbjct 999172 CTTTCCGGTACCTGGC 999187 >seq6949 Length=744727 Score = 102 bits (112), Expect = 1e-16 Identities = 260/393 (66%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || || || || || |||| || || || | | |||||||| ||||| ||||| ||| Sbjct 115996 TTTGTTGCAGCAATAACAATGATTCCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 116055 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 || ||||||| || ||||| | |||||| || || | ||||| || | ||| Sbjct 116056 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCTCCACCAATACCAGTACCTCTTTGA 116115 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 ||| || |||||||| ||||||| || || ||||| || ||| || || | Sbjct 116116 CGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTGGCCTTT 116175 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 | || ||||| |||||||| || || || ||||||||||| || ||||| | | Sbjct 116176 TTGAAAAGATCACGTACACGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCAGAA 116235 Query 9815 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | | | |||| || || || ||| || ||| || ||||| || ||| || || || Sbjct 116236 CCTG-AGATTGAGAAAAATGGAACACCAGCTTCCCCAGCAATTGCCTTGGCTAGCAGGGT 116294 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCC 9933 ||| || || || || || | || || |||| ||||| || ||| | | Sbjct 116295 CTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACACCCTTAGGAATGCGAGCCCCAACTGC 116354 Query 9934 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | | |||||||||| ||| | ||| ||||| Sbjct 116355 GGTGAACCTCTCAGGTTTCTTCAAAAACTCCAC 116387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583032591921240