Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8682 145 7e-30 seq6563 127 2e-24 seq10231 107 2e-18 seq3222 89.7 4e-13 seq10557 87.8 2e-12 >seq8682 Length=358022 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || |||||| | || || || || |||||| || Sbjct 101537 ATGCAGATCTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 101478 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||||||||| || || || ||||| || || Sbjct 101477 GACACCATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAG 101418 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||| || | || ||| | ||| || ||||||||||| Sbjct 101417 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTTGCCGATTACAAC 101358 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | |||||||| | || | || ||||| || Sbjct 101357 ATTCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTCCGTGGTGGTAT 101308 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | || || ||| || Sbjct 100853 ATGCAGATTTTTGTTAAGACCCTCACTGGCAAGACCATCACATTGGAGGTTGAAAGCTCA 100794 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| || ||||| || || ||||| Sbjct 100793 GACACCATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 100734 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| | ||||| | ||| | |||| |||||| Sbjct 100733 CAGAGGTTGATCTTTGCCGGCAAACAGCTCGAAGATGGGCGTACCCTGGCCGACTACAAC 100674 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||||||||||| | || ||||| || Sbjct 100673 ATCCAGAAGGAGTCGACCCTTCACTTGGTTTTGCGTCTACGTGGTGGGAT 100624 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | ||||| ||||| || || || Sbjct 101309 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 101250 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || |||||||| || || ||||| || || || || Sbjct 101249 GACACCATTGATAACGTAAAGGCCAAGATTCAAGATAAGGAGGGCATCCCCCCAGACCAG 101190 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| |||||||| | |||||| || ||| || ||||||||||| Sbjct 101189 CAGAGGCTGATCTTCGCTGGCAAACAGCTTGAAGACGGTCGAACCCTTGCCGATTACAAC 101130 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || ||| | |||||||| | ||| | || ||||| || Sbjct 101129 ATTCAGAAGGAATCTACCCTTCATTTGGTGCTCCGTCTCCGTGGTGGAAT 101080 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||| || | || || | || || ||| ||| Sbjct 101081 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAAACCATCACCTTGGAGGTTGAAAGTTCC 101022 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||| ||||| || || || || || || || Sbjct 101021 GACACCATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCAG 100962 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| | || || | ||| | |||| |||||| Sbjct 100961 CAGAGGTTGATCTTTGCCGGCAAACAGCTCGAGGATGGACGTACCCTGGCCGACTACAAC 100902 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||||||||||| | || ||||| || Sbjct 100901 ATCCAGAAGGAGTCAACCCTCCACTTGGTTTTGCGTCTCCGTGGTGGGAT 100852 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | ||||| | || || ||| || Sbjct 100625 ATGCAAATTTTTGTGAAGACACTCACTGGCAAGACCATTACCTTGGAGGTAGAAAGCTCG 100566 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || |||||||| ||||| || ||||| || || || || Sbjct 100565 GACACAATCGACAATGTTAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 100506 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | || ||| | |||| || | || |||||| Sbjct 100505 CAGAGGTTGATCTTTGCGGGTAAGCAGCTCGAGGACGGCAGGACCCTTGCGGACTACAAC 100446 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| ||||| |||| ||||| || Sbjct 100445 ATCCAGAAGGAGTCGACACTTCACTTGGTGCTGCGTCTGCGTGGTGGTAT 100396 >seq6563 Length=399665 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||||||||| || Sbjct 389678 ATGCAGATTTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAAGTGGAGAGCTCA 389619 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || ||| ||||||||||| || ||||| ||||| || || Sbjct 389618 GACACGATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 389559 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || | || || || |||| || | ||||||||| Sbjct 389558 CAGAGGCTGATTTTCGCAGGGAAGCAGCTTGAGGATGGTAGGACCCTTGCTGATTACAAC 389499 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || | || | ||| | || ||||| || Sbjct 389498 ATTCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGTCTCCGTGGTGGAAT 389449 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || |||||||| || Sbjct 389450 ATGCAGATTTTCGTTAAGACCCTTACAGGGAAGACCATCACCCTCGAAGTGGAGAGCTCG 389391 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| ||||||||||| || ||||| || || ||||| Sbjct 389390 GACACAATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 389331 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || ||| | ||||| || |||| | | ||||||||| Sbjct 389330 CAGAGGCTGATTTTCGCCGGGAAGCAACTCGAAGATGGTAGGACCCTCGCAGATTACAAC 389271 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || | || ||||| || ||||||| || Sbjct 389270 ATCCAGAAGGAATCAACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGAAT 389221 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || || || ||||| ||| || Sbjct 389907 CATGCAGATTTTTGTTAAGACCCTTACGGGAAAGACCATCACCCTGGAAGTCGAAAGCTC 389848 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | || || || ||||| || || || ||||| ||||| || || Sbjct 389847 TGACACGATTGACAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGACCA 389788 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | || || | |||| || | || ||||| Sbjct 389787 GCAGAGGCTCATCTTTGCGGGGAAGCAGCTTGAGGATGGAAGGACCCTTGCTGACTACAA 389728 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 389727 CATTCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGAAT 389677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || ||| | || || || || Sbjct 389222 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTTTGGAGGTCGAGAGCTCG 389163 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || ||||| || || || || Sbjct 389162 GACACTATTGATAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 389103 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || |||| || | ||| | | ||||||||| Sbjct 389102 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGACGATGGAAGGACTTTGGCTGATTACAAC 389043 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| ||| | || | ||| | ||| | || |||||| Sbjct 389042 ATTCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTCCGTGGTGGC 388995 >seq10231 Length=688147 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || |||||| |||| || || || ||||| | | Sbjct 310533 CCATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACTATAACCCTAGAGGTGGAGTCCT 310474 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || || | ||||| || || || ||||| ||||| || || ||||| | Sbjct 310473 CTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACC 310414 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||| ||||| | || ||| | ||| | |||| || | Sbjct 310413 AGCAGCGCCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGAACCCTCGCCGACTATA 310354 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||| || ||||||||||| | || ||||| Sbjct 310353 ACATCCAGAAGGAGTCGACGCTTCACCTGGTT 310322 >seq3222 Length=516221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 27076 TTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAAT 27135 |||| || || ||||| || || || ||||| ||| | || || | || || || |||| Sbjct 55331 TTCAGGATAAGGAAGGAATCCCGCCTGATCAGCAGAGATTGATTTTTGCTGGGAAGCAAT 55272 Query 27136 TGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGG 27195 ||||||| | ||| || | ||||||||||| ||||||||||| || | ||| ||| Sbjct 55271 TGGAAGATGGGAGGACTCTTGCTGATTACAACATCCAAAAGGAGTCAACACTTCATCTGG 55212 Query 27196 TTTTGCGTTTGCGGGGTGG 27214 ||||| | | |||||||| Sbjct 55211 TTTTGAGGCTTCGGGGTGG 55193 >seq10557 Length=461501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 || || || ||||| ||||| || ||||||||| | || ||||| | || || ||| Sbjct 173451 ATACAAATCTTTGTCAAAACCCTAACCGGCAAGGCCATCACTCTCCAGGTCGAGAGCTCC 173392 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 | | |||| || | ||||| || || || ||||| | ||||| | ||| ||||| Sbjct 173391 G-CACGATCGACAACGTCAAGGCCAAGATCCACGACAACGGCGGCATTCTACCGGATCAT 173333 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| |||| | | ||| ||||| | |||||| || ||| | ||||||||||| Sbjct 173332 CAGCGTCTAATCTTCATCGG-AAACAGGTTGAAGACGGTCGAACCCTCGCCGATTACAAC 173274 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 | | || ||||| || | ||| ||||| Sbjct 173273 GTCGAGAAAGAGTCCACTCTCCATCTGGTT 173244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434748232739520