Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9707 89.7 4e-13 seq8682 87.8 1e-12 >seq9707 Length=1014798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || | || ||||| ||| Sbjct 725256 AATATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 725315 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| || || ||||| || Sbjct 725316 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGG 725373 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| | || |||| || | | | |||| | Sbjct 725374 ACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGAACCCTCGCCGACT 725433 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGACG 28021 |||||||||| || ||| |||| | ||| ||||| | ||| | || ||||||| || Sbjct 725434 ACAACATCCAGAAGGAGTCCACTCTCCATCTGGTTCTTCGTCTCCGCGGCGGCGGCG 725490 >seq8682 Length=358022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || ||||| || || ||| | || || |||||| | Sbjct 100853 ATGCAGATTTTTGTTAAGACCCTCACTGGCAAGACCATCACATTGGAGGTTGAAAGCTCA 100794 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 100793 GACACCATTGACAAT--GTCAAGGCCAAGATTCAAGACAAGGAGGGCATTCCCCCAGATC 100736 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| ||||| | || || | || | | || |||| |||| Sbjct 100735 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTCGAAGATGGGCGTACCCTGGCCGACTACA 100676 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || |||||||||||| | ||||| || Sbjct 100675 ACATCCAGAAGGAGTCGACCCTTCACTTGGTTTTGCGTCTACGTGGTGG 100627 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || || || || ||| || || | || || ||||| | Sbjct 101082 AATGCAAATCTTTGTTAAGACCCTCACCGGAAAAACCATCACCTTGGAGGTTGAAAGTTC 101023 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| || ||| || || ||||| || || |||| || Sbjct 101022 CGACACCATTGATAAT--GTGAAAGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGAC 100965 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || |||||||| ||||| | || || | ||| | | || |||| ||| Sbjct 100964 CAGCAGAGGTTGATCTTTGCCGGCAAACAGCTCGAGGATGGACGTACCCTGGCCGACTAC 100905 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || | || |||||||||||| | ||||| || Sbjct 100904 AACATCCAGAAGGAGTCAACCCTCCACTTGGTTTTGCGTCTCCGTGGTGG 100855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355726645278027