Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq8682 96.9 3e-15 seq9707 93.3 4e-14 seq10231 89.7 4e-13 seq6147 82.4 7e-11 >seq8682 Length=358022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||||||| || ||| ||| ||||| || || ||||||||||| ||||| | Sbjct 101322 GCGGAGCACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCAAGGGTTCGGCC 101381 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 ||| || ||||| ||||| || || || || | |||||||| ||||||| | | ||| | Sbjct 101382 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGG-ATACCCTCCT 101440 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCG 39244 |||| || || ||||| | | | || || ||| ||||| || | | Sbjct 101441 TGTCTTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCT---TTCCACCTCGAGGG 101497 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| | || || || || ||||| |||||||| ||||||| Sbjct 101498 TGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATCT 101539 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || || || || || || ||||||||||| ||||| |||| || Sbjct 101100 CACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGACCGTCTTC 101159 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191 |||||||||||| || || || || | ||||||||| | ||| | || ||| || || Sbjct 101160 AAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 101216 >seq9707 Length=1014798 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || ||||| || ||||| || || || |||| || Sbjct 740397 CACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGCCCGTCCTC 740338 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | || | | ||| |||||| Sbjct 740337 GAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTG 740278 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || | | | ||| | | | ||| || ||| ||| || || | ||||| Sbjct 740277 GATCTT-GGCCTTAACGTTGTCGATCGTGTCCGAGCT---CTCGACCTCGAGGGTGATCG 740222 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || || || || ||||| |||||||| |||||| Sbjct 740221 TCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATC 740187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| ||| || || || ||||| ||||| || ||||| |||| || Sbjct 739485 CACCAGATGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCGTCTTC 739426 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || |||||||||||||| | || | | || |||||| Sbjct 739425 GAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTG 739366 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || ||| ||| || || | ||||| | | Sbjct 739365 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCT 739307 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || || || ||||| || ||||| ||||| ||| Sbjct 739306 TGCCGGTTAGTGTTTTCACGAAGATCTGCATATTT 739272 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||| || || || || || ||||| || ||||| |||| || Sbjct 725467 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCTTCG 725408 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || || || || |||||||||||||| | || | | ||| |||||| | Sbjct 725407 AGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGG 725348 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| ||| || || | ||||| | || Sbjct 725347 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTT 725289 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || || || ||||| || ||||| ||||| ||| Sbjct 725288 GCCGGTTAGGGTTTTCACGAAGATCTGCATATTT 725255 >seq10231 Length=688147 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | | | |||| || ||||| ||| || || || ||||| ||||| Sbjct 310305 CCTCCTCTGAGCCTGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTATAGTCGGCG 310364 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| || |||||||| || || || || || ||||||||||||| || Sbjct 310365 AGGGTTCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 310424 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||| || |||| | | | || || |||||||| Sbjct 310425 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACC 310484 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || ||| | || ||||| || ||||| || ||||| ||||| Sbjct 310485 TCTAGGGTTATAGTCTTGCCCGTTAGGGTTTTCACGAAGATCTGCAT 310531 >seq6147 Length=2276951 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| || | ||| | ||||| || || ||| ||| || || || || || ||||| Sbjct 1403067 GCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1403008 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || |||| || ||||| || || || || || || ||||||||||| | || Sbjct 1403007 GAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 1402948 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| || |||| | | | || ||| || || || Sbjct 1402947 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGAC 1402888 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || | || ||||| || ||||| || ||||| ||||| Sbjct 1402887 CTCGAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 1402840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429381736541813