Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 188 7e-43 seq8 161 1e-34 >seq6 Length=10738081 Score = 188 bits (208), Expect = 7e-43 Identities = 410/607 (68%), Gaps = 15/607 (2%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAAT 17017 ||| || ||||||||||| || || ||||||||||| ||||| | ||||| |||||| Sbjct 5633824 CAGGCAAGCGAAATCGCAGTGCAACCCCTCGTCTCT--TGATATCAACTCGTTTGAAAAT 5633767 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || ||||| |||||| || |||||||| ||||| ||||||||| || ||||| Sbjct 5633766 GTTAACCCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGCGCAAAAGCTGCCAGAG 5633707 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-TCGCGTCTTT 17136 |||||||| ||||||||| | || || |||| || ||||||||| | | | || | Sbjct 5633706 AAGAATATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTG 5633647 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 || |||||| | ||||| ||||| | | | |||| || || || || Sbjct 5633646 GT----AATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAAT 5633591 Query 17197 GGCCTTAAATAATTTCTCTTTTTC--CTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 || | ||| | | ||| || ||| | || | || || | || | | ||| Sbjct 5633590 TGCGTGAAACAGACGGTTTTTCTCGGCTGCA--TCCTTGATGTAGGATTCTAACAAGAGG 5633533 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||||| || || || |||||||| || ||||| || || ||||| ||| || || Sbjct 5633532 CTGTACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCC 5633473 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | |||||||||| ||| || || || |||||| | || || || || Sbjct 5633472 TCGGAATTTTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCA 5633413 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || ||||| || || | | | | ||||||| | ||| ||| | | || ||| Sbjct 5633412 GAAGCAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTT 5633353 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 |||||| || ||||| ||| | || |||||||||| |||||| ||| ||| | Sbjct 5633352 TCCCAGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCG 5633293 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCT 17554 ||||| || ||||| | ||| || ||| |||||| || ||||| | | |||||||| Sbjct 5633292 GCCTTCTTGTACATTTCCCAGATTTCAGGGTATTGAATTGGGAACATACAGAATCTATCT 5633233 Query 17555 AAGGATT 17561 ||||| Sbjct 5633232 --GGATT 5633228 >seq8 Length=10307871 Score = 161 bits (178), Expect = 1e-34 Identities = 390/582 (67%), Gaps = 9/582 (2%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 |||||| ||||||||||| |||| ||||||||||| ||| | ||||| || || || Sbjct 4256104 CAGACACGCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGT 4256163 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || |||||| || || ||||| ||||| |||||||| ||| || || || Sbjct 4256164 TAAGCCCGGCATCAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAA 4256223 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 |||||| ||||||||| | || || ||||| | || || ||| | | || || Sbjct 4256224 GAATATCCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGT- 4256282 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 ||| |||||| | ||||||||||||||| | | ||| | || || || || Sbjct 4256283 -CGA-TCCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGC 4256340 Query 17200 CTTAAATAATTT-CTCTTTTTC-CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || | ||||| | | | | || | || || | || | | |||||| Sbjct 4256341 GCGGAACAGGCGGCTCTTCTCGGCCGAA--TCCTTGATGTATGATTCCAACAAGAGGCTG 4256398 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTTC 17316 ||||| |||||||| |||||||| || || || || || |||||||| ||| ||||| || Sbjct 4256399 TACATCTCGGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCA-CGGGCCTC 4256457 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | ||||| |||||| ||| || | || || |||||| || || ||||| Sbjct 4256458 GGAGATTTGGACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGA 4256517 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436 || ||||| || |||| || ||| ||||||| | ||| ||||| | || || | Sbjct 4256518 AGCAGCGAAGAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTC 4256577 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||||| | ||||| ||| | ||| |||||||||| ||||| || || | || Sbjct 4256578 CCAGTGACGGAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGC 4256637 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || ||||| | ||| || | ||||| || ||||| Sbjct 4256638 TTTCTTGTACATTTCCCATATTTGGGGATATTGAATTGGGAA 4256679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517522291040040