Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 158 1e-33 seq8 141 1e-28 >seq6 Length=10738081 Score = 158 bits (174), Expect = 1e-33 Identities = 409/609 (67%), Gaps = 21/609 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAG 16256 || || ||||| ||||| || | || |||||||| ||||| | ||||| ||||| | Sbjct 5633823 AGGCAAGCGAAATCGCAGTGCAACCCCTCGTCTCT--TGATATCAACTCGTTTGAAAATG 5633766 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAA 16315 ||||||| ||||| || |||||||| |||||||||||||| ||||| | || || Sbjct 5633765 TTAACCCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCCAGAG 5633707 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 |||||||| ||||| || | || || |||| || ||||| ||| | || || | Sbjct 5633706 AAGAATATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAA---AGATTCCGAA 5633650 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 | |||||| || ||| | ||||| | || | ||| || || || || Sbjct 5633649 CTGGTAATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATT 5633590 Query 16436 GCCTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAAC 16493 || | ||||| | ||| || ||| ||| | || || | || | || | | Sbjct 5633589 GCGTGAAACAGACGGTTTTTCTCGGCTG--CATCCTTGATGTAGGATTCTAACAAGAGGC 5633532 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 ||||||| || || || |||||||| || ||||| || || || |||||| ||||||| Sbjct 5633531 TGTACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCT 5633472 Query 16554 CCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | | |||| ||||| | | ||| || |||||||| || | || ||||| ||| Sbjct 5633471 CGGAATTTTGAACTTCTTTCATGAAA-CGAGAGGCCAGGTTTTCGATAACAATACCATCA 5633413 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 ||||| || || || | | | ||||||| | ||| ||| | || ||| | Sbjct 5633412 GAAGCAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTT 5633353 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 | ||| || || ||||| ||| | || |||||||| | ||||| || ||| | Sbjct 5633352 TCCCAGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCG 5633293 Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA-ATACGACGTATCTAT 16790 ||||| || ||||||| ||| || ||| |||||| | |||||| |||| | |||||| Sbjct 5633292 GCCTTCTTGTACATTTCCCAGATTTCAGGGTATTGAATTGGGAACATAC--AGAATCTAT 5633235 Query 16791 CTAAGGATT 16799 || ||||| Sbjct 5633234 CT--GGATT 5633228 >seq8 Length=10307871 Score = 141 bits (156), Expect = 1e-28 Identities = 374/562 (67%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||||||||| ||||| ||||| || |||||||| ||| | ||||| || |||||| Sbjct 4256105 AGACACGCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTT 4256164 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 || || ||||| || || ||||| ||||||||||||||| || || || ||| Sbjct 4256165 AAGCCCGGCATCAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAG 4256224 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTAT 16376 ||||| ||||| || | || || ||||| | || |||||| | | | | | | | Sbjct 4256225 AATATCCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGT-- 4256282 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 || ||||||| | |||| |||||||||| | || | || || || | Sbjct 4256283 --CG-ATCCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTG 4256339 Query 16437 CCTTAAACA-ATTTCTCTT-TTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 | |||| ||||| | | || ||| | || || | || | || | || Sbjct 4256340 CGCGGAACAGGCGGCTCTTCTCGGCCGA--ATCCTTGATGTATGATTCCAACAAGAGGCT 4256397 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCT 16553 |||||| || ||||| |||||||| || || || || || || || || ||| || |||| Sbjct 4256398 GTACATCTCGGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCA-CGGGCCT 4256456 Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | ||||| |||||| || || | || ||||| || || ||||||||| Sbjct 4256457 CGGAGATTTGGACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAG 4256516 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 ||||| || || |||| || || ||||||| | ||| |||||| || || || | Sbjct 4256517 AAGCAGCGAAGAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTT 4256576 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| | | ||||| ||| | ||| |||||||| | ||||| ||| || | | Sbjct 4256577 CCCAGTGACGGAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGG 4256636 Query 16734 CCTTTTTATACATTTTCCAAAT 16755 | || || ||||||| ||| || Sbjct 4256637 CTTTCTTGTACATTTCCCATAT 4256658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511391367173960