Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 188 8e-43 seq8 141 1e-28 seq257 109 7e-19 seq27 109 7e-19 >seq6 Length=10738081 Score = 188 bits (208), Expect = 8e-43 Identities = 403/598 (67%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| | ||||||||||| || || ||||| ||||| || | Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| | || || || || | ||| ||||| | |||||| | | ||||| ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCG-CGCAAAAGCTGCCAGAGAAGAA 5633702 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATG 24310 || || || || || ||||| | || | ||| | || | | ||| | Sbjct 5633701 TATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTA-- 5633644 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | | ||| | || ||||||| || ||||| || ||||| || || | Sbjct 5633643 -ATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTG 5633585 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||| ||| |||||| || ||| || | || | || | ||| || || ||||| Sbjct 5633584 AAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACAT 5633525 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 |||||||| ||||| || || || ||||| || |||||||| | |||||||| | | Sbjct 5633524 CTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATT 5633465 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 || |||||| | || || || | ||||| | || || || ||| || || Sbjct 5633464 TTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGC 5633405 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 24610 || || || | ||| | | || || | ||| ||| | | ||||| || | ||| || Sbjct 5633404 GAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGTC 5633345 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 | | ||||| || | || |||||||| | ||||| || || ||||| ||||| || Sbjct 5633344 ACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 5633285 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 24728 ||||| | |||||| ||| | ||||||||||| || ||| ||||||| ||||||| Sbjct 5633284 GTACATTTCCCAGATTTCAGGGTATTGAATTGGGAACATACAGAATCTATCTGGATTT 5633227 >seq8 Length=10307871 Score = 141 bits (156), Expect = 1e-28 Identities = 564/877 (64%), Gaps = 18/877 (2%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| |||||||| || || | ||| ||||| ||||| ||||| || | || || || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 ||||| |||| | ||||| ||| || ||||| || | ||||||| || | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 ||| | ||| || || ||||| ||||| |||||| ||||| ||||| || | | Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 24023 TTTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 | || | || | | | || | ||| | | | | | || || ||||| | | | Sbjct 4255996 CGCACACGGCAATGCGTCGCAC-ACGAACTCCCTCT-CGATGTCCACTGCGTCGGCAACA 4256053 Query 24081 ATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTAAACATCAAACAT 24137 || | ||| || |||||| || | | || || | | | | || ||| Sbjct 4256054 ATTCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGT---AGAGCAGACAC 4256110 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 ||||||||||||||||| ||||||||||| || || ||||| || || || | || Sbjct 4256111 GCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCC 4256170 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAAT 24256 ||||| ||||| ||||| || | ||| ||||| | | || | | | || || ||||| || Sbjct 4256171 GGCATCAGGCCGCGCTTCTTCAACCAGAATATCG-CACAGAAGCTGCCGGAGAAGAATAT 4256229 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGTAT 24313 || || || || || || || || | || | | ||| | ||| || Sbjct 4256230 CCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGTCG---AT 4256286 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| | | ||||| ||||| || || || || || | ||||| || || || Sbjct 4256287 CCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAA 4256346 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 || | | || || ||| || | |||| || | ||| || || ||||| || Sbjct 4256347 CAGGCGGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTC 4256406 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 || || ||||| ||||| || ||||| || ||||| || | ||||||| || || Sbjct 4256407 GGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTG 4256466 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 ||||| | || || | || | ||||| || || |||||| || || || Sbjct 4256467 GACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAA 4256526 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || |||| |||||| | || || | ||| ||||| | ||||| | | ||| | | Sbjct 4256527 GAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACG 4256586 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 || ||||| || | ||| |||||||| | ||||| || || || || || || || || Sbjct 4256587 GAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTA 4256646 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 ||| | ||| || | ||||||||||||| || ||| Sbjct 4256647 CATTTCCCATATTTGGGGATATTGAATTGGGAACATA 4256683 >seq257 Length=623575 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||||||||| | || | ||| |||| ||| | || | || |||||||| |||||| Sbjct 424937 TCCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACC 424878 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || | || || || | | |||| ||||||||| || || Sbjct 424877 ATTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGA 424818 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 424817 AACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||||| ||||||||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 >seq27 Length=6178458 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || |||| |||| | || | || |||||| | |||||| Sbjct 1665526 TCCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACC 1665467 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || |||||||| | | |||||||||||||| || || Sbjct 1665466 ATTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGA 1665407 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || ||| || || |||||||| || Sbjct 1665406 AACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATAT 1665347 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 1665346 TCCTTCAATACTATCATCTTTCATG 1665322 Score = 100 bits (110), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGG 53997 |||||||||| ||||||||| || |||||| || | | || |||||| |||| || Sbjct 1666014 GTATACAATCTTTCAAACTCCTCGCCCCAA-CAGTCTGACAGCCCAGGAGCCTCATTGGG 1665956 Query 53998 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 || | ||| ||||| | || ||| | |||| || |||||||||||| |||||||| Sbjct 1665955 GCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAAGAGATCGGGAATCCA 1665896 Query 54058 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 |||||| ||||||||| || | || |||||| || | || || Sbjct 1665895 AAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694860263440