Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 2e-12 seq65 84.2 2e-11 >seq22 Length=7127660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||| || ||||||||||| || || || ||||| ||| | || | || || Sbjct 3801921 AGATCAACAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACCCTAGCTGA 3801980 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||| |||||||| |||||||||||| |||| Sbjct 3801981 TTACAATATCCAGAAGGAGTCTACTCTTCACTTGGT 3802016 >seq65 Length=3230173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||| || ||||||||||| || || || || || ||| | || | || || Sbjct 2676229 AGATCAACAGAGGCTTATCTTTGCAGGGAAGCAGCTAGAGGATGGAAGGACCCTAGCTGA 2676170 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||| |||||||| |||||||||||| |||| Sbjct 2676169 TTACAATATCCAGAAGGAGTCTACTCTTCACTTGGT 2676134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428317191096965