Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq37 138 2e-27 seq97 125 1e-23 seq65 123 4e-23 seq22 116 6e-21 seq30 104 4e-17 seq31 102 1e-16 seq1 93.3 6e-14 >seq37 Length=4974474 Score = 138 bits (152), Expect = 2e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || || || || || ||| | ||| ||||| Sbjct 2663625 TACAGATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTTGAAA 2663566 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||| || ||| ||| | || ||||| |||||||||||||| || || |||| Sbjct 2663565 GCTCTGACACTATTGACAATGTCAAGGCCAAAATCCAAGATAAAGAAGGAAT-CCCCCTG 2663507 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | || || || ||||| || || || || ||| |||||||| ||||||| || | ||| | Sbjct 2663506 ACCAGCAGAGACTTATCTTCGCTGGTAAGCAACTAGAGGATGGTCGAACCTTGGCAGACT 2663447 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | | |||||| || ||||| || |||||| ||||| | ||||| ||||||| || Sbjct 2663446 ACATTATTCAGAAGGAATCCACATTGCATCTGGTTCTTCGTTTGAGAGGTGGAAT 2663392 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| | ||||| || | || |||||||| || | || | ||| || | Sbjct 2663166 ATGCAAATCTTTGTTAAGACGCTTCCGGG-AAAACTATCACGCTTGAAGTAGAAAGCTCA 2663108 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || || ||||| || || |||| || |||||||| || Sbjct 2663107 -GACACCATAGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGCCATCCCACCTGACCA 2663049 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||| |||||||||||||||||| | || || || | |||||| || Sbjct 2663048 ACAGAGGCTCATATTTGCTGGAAAACAATTAGAGGATGGCCGTACCTTGGCAGATTACAA 2662989 Query 124718 TATTCAAAAAGAATCAAC 124735 ||||| || || || || Sbjct 2662988 CATTCAGAAGGAGTCCAC 2662971 >seq97 Length=2389559 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || || || || ||| | ||| | || ||| | Sbjct 873272 ATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACAATTACTCTGGAGGTAGAGAGCTCA 873213 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || |||||||| || || ||||| ||||||||||| Sbjct 873212 -GATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGATCA 873154 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||| || || || || || ||| | || || || | ||||| || Sbjct 873153 GCAGAGGCTCATTTTTGCTGGGAAGCAGTTGGAAGATGGACGCACTTTGGCCGATTACAA 873094 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || ||||||||||| | ||| |||| ||||| || Sbjct 873093 CATACAGAAGGAATCTACATTGCATTTGGTGCTTCGTCTACGTGGTGGGAT 873043 Score = 123 bits (136), Expect = 4e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||| | |||||||| ||||| || | ||| | || ||| Sbjct 873044 ATGCAGATTTTTGTGAAGACATTGACAGGCAAGACTATCACACTTGAGGTGGAGAGCTC- 872986 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || ||||| || ||||| ||||| || || || || Sbjct 872985 TGATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCGGACCA 872926 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||| || || ||| | |||||| |||| || | | || || || Sbjct 872925 ACAAAGGCTTATTTTTGCTGGGAAGCAACTTGAGGATGGTCGCACCCTGGCGGACTACAA 872866 Query 124718 TATTCAAAAAGAATCAACTTTGCAT 124742 ||| || || ||||||||| | ||| Sbjct 872865 TATCCAGAAGGAATCAACTCTTCAT 872841 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || ||||||||| | || | || | Sbjct 873956 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCT 873897 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | ||| ||||| ||||| || || || || || || || || Sbjct 873896 GATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 873837 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| ||||| ||| | || ||| | || || || | ||||| || Sbjct 873836 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAAC 873777 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || | || | ||| | || || |||| || || ||| || Sbjct 873776 ATTCAAAAAGAATCTACACTCCACCTAGTTCTTCGGTTGAGAGGGGGAATGCAAATTT 873719 >seq65 Length=3230173 Score = 123 bits (136), Expect = 4e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||||||||| || || ||| | ||| | || | || ||| Sbjct 2676342 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACTGTTACTTTGGAAGTGGAGAGC-TC 2676284 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || |||| | || || || ||||| || || || |||||||| ||||| Sbjct 2676283 TGATACTATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCA 2676224 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| |||||||| || || |||||||| | | || ||| ||||| || Sbjct 2676223 ACAGAGGCTTATCTTTGCAGGGAAGCAGCTAGAGGATGGAAGGACCCTAGCTGATTACAA 2676164 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| | || ||||| | ||| | || || ||||| Sbjct 2676163 TATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGYGGTAT 2676113 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| ||||| ||||| | ||| | || ||| Sbjct 2676114 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAAACCATAACACTGGAGGTGGAGAGCTC- 2676056 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || || || || ||||| || || || || ||||| Sbjct 2676055 TGACACCATAGACAATGTGAAAGCCAAGATCCAGGACAAAGAGGGCATYCCTCCGGATCA 2675996 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || ||| | |||||| | ||||| || | |||||||| Sbjct 2675995 GCAGAGGCTCATCTTTGCTGGGAAGCAACTTGAGGATGGGCGAACGTTGGCGGATTATAA 2675936 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 |||||| || |||||||| | || | ||| | ||| | || ||||| ||| Sbjct 2675935 TATTCAGAAGGAATCAACCCTCCACCTCGTTCTTCGTCTTCGTGGTGGCATT 2675884 >seq22 Length=7127660 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||||||||| || || || || ||| | || | || ||| Sbjct 3801808 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATTACTTTGGAAGTGGAGAGC-TC 3801866 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || || || ||||| || || || |||||||| ||||| Sbjct 3801867 TGATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCA 3801926 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| |||||||| || || | |||||| | | || ||| ||||| || Sbjct 3801927 ACAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACCCTAGCTGATTACAA 3801986 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| | || ||||| | ||| | || |||||||| Sbjct 3801987 TATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGTGGTAT 3802037 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| ||||| ||||| | ||| | || ||| Sbjct 3802036 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAAACCATAACACTGGAGGTGGAGAGCTC- 3802094 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || || || || ||||| || || || || ||||| Sbjct 3802095 TGACACCATAGACAATGTGAAAGCCAAGATCCAGGACAAAGAGGGCATYCCTCCGGATCA 3802154 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || ||| | |||||| | ||||| || | |||||||| Sbjct 3802155 GCAGAGGCTCATCTTTGCTGGGAAGCAACTTGAGGATGGGCGAACGTTGGCGGATTATAA 3802214 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 |||||| || |||||||| | || | ||| | ||| | || ||||| ||| Sbjct 3802215 TATTCAGAAGGAATCAACCCTCCACCTCGTTCTTCGTCTTCGTGGTGGCATT 3802266 >seq30 Length=5940761 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| ||||| || || | || |||| ||| Sbjct 3346156 ATGCAGATTTTTGTTAAGACCCTCACAGGGAAAACCATCACACTCGAAGTTGAGAGCTCG 3346097 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || || ||||| || || || || || ||||| || || Sbjct 3346096 -GACACAATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCACCAGACCA 3346038 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||||||||| ||||| || | |||||| | || || | | ||| || || Sbjct 3346037 GCAAAGGCTTATTTTTGCTGGAAAGCAGCTGGAGGATGGACGGACTCTTGCAGACTACAA 3345978 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||| | || | || | ||| | ||||||||||| Sbjct 3345977 CATTCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTTCGAGGTGGTAT 3345927 >seq31 Length=5807843 Score = 102 bits (112), Expect = 1e-16 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||||||||| || || || || ||| | || | || ||| Sbjct 4127964 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATTACTTTGGAAGTGGAGAGC-TC 4128022 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || || || ||||| || || | |||||||| ||||| Sbjct 4128023 TGATACTATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGAGAATACCACCAGATCA 4128082 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | | |||||||| |||||||| || || |||||||| | | || ||| ||||| || Sbjct 4128083 ATAGAGGCTTATCTTTGCAGGGAAGCAGCTAGAGGATGGAAGGACCCTAGCTGATTACAA 4128142 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | | || || ||| | || ||||| | ||| | || |||||||| Sbjct 4128143 TATCC---AGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGTGGTAT 4128190 Score = 95.1 bits (104), Expect = 2e-14 Identities = 140/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAAC-TA----TAGAGATTGAAG 124593 ||||| || ||| | ||||| || ||||| ||||| ||||| || | ||| | || Sbjct 4128189 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAAACCATAACATAACACTGGAGGTGGAGA 4128248 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||| || || ||| | ||| || || || || |||||||| || || || | Sbjct 4128249 GTTCTGACACCATAGACAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCGG 4128308 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||| || ||||| || ||||| ||||| ||| | |||||| | ||||| || ||||| Sbjct 4128309 ATCAGCAGAGGCTCATCTTTGCTGGAAAGCAACTTGAGGATGGGCGAACGTTGACAGATT 4128368 Query 124714 ATAATATTCAAAAAGAA 124730 |||||||||| || ||| Sbjct 4128369 ATAATATTCAGAAGGAA 4128385 >seq1 Length=14325340 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || || || || || |||||||||||||| || |||||||| || ||||||| Sbjct 9211804 TTCAGGACAAGGAGGGCATTCCCCCTGATCAACAAAGACTAATTTTTGCTGGTAAACAAT 9211745 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | || || | | |||||| || || ||||| ||||| || ||||| ||| Sbjct 9211744 TGGAAGATGGCCGTACTCTTGCAGATTACAACATCCAAAAGGAATCGACCTTGCACCTGG 9211685 Query 124747 T 124747 | Sbjct 9211684 T 9211684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755421976150400