Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6 140 3e-28 >seq6 Length=10738081 Score = 140 bits (154), Expect = 3e-28 Identities = 565/877 (64%), Gaps = 31/877 (4%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || ||| ||||| || | ||| | || ||||||||||| || || ||| Sbjct 5634126 GACATGACCGAAGCTTTCTGATAGTCGCCAACCCGTTTCTCAAAGAAATTGGTCTTCCCT 5634067 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCG 16045 | ||| ||||| ||||| |||||||||| || ||||| || |||| || || Sbjct 5634066 TGTAAAGAAATCAACTCCATCCAATCAAAAGG--GTTCTGAAC-ATTGTATATCTTTCCG 5634010 Query 16046 CATCCCAA--TTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAAT 16103 ||||||| |||| | || ||||| ||||| || || || ||||| |||| | || Sbjct 5634009 TATCCCAAGGCTCCA--AGCAACCTATCGGCCACGAACTCGATGTACTGACTCATCAGAT 5633952 Query 16104 CACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATAT 16163 || ||||||||| | ||| | || | ||| || || || | | || || | Sbjct 5633951 CAGCGTTCATTCCCACTAACGCACATGGTAATGCGTCGCATACGAACTCCCTCTCGATTT 5633892 Query 16164 TAACCGCTT---CAATGATTATATCTCTTACTACACTATTTAACGGAG-----GGTTTAA 16215 ||||||| ||| |||| || | ||| | || || || || | || || Sbjct 5633891 CCACCGCTTCCGCAACGATT---CCTTTCACT-CGCT-CTTCACTCAGCTTCTGCTTCAA 5633837 Query 16216 TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAA 16275 || | | | | | ||||| ||||| || ||||| || ||||| || ||| || Sbjct 5633836 AAACTCGT---ATAGCAGGCAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAA 5633780 Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 ||||||||||||||| | || ||||| | || ||||| || | ||| ||||| ||| Sbjct 5633779 CTCGTTTGAAAATGTTAACCCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGCGCA 5633720 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA 16395 ||| ||||| |||||||| || || || ||| || || || | || || || | Sbjct 5633719 AAAGCTGCCAGAGAAGAATATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAA 5633660 Query 16396 CGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTT 16455 | | | ||| ||||| | ||| | ||||| | || || || Sbjct 5633659 AGAT---TCCGAACTGGTAATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGG 5633603 Query 16456 CATGTTCTCTATTGCATTAAATAAATAAtttttttC-TTTGCTATCTAAAATATAAGTAT 16514 || |||| ||||| | ||| | | ||||| || ||| ||| || || | | Sbjct 5633602 GATAGTCTCAATTGCGTGAAACAGACGGTTTTTCTCGGCTGC-ATCCTTGATGTAGGATT 5633544 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 ||| | | || ||||| || ||||| || ||||| |||||||| || ||||| || | Sbjct 5633543 CTAACAAGAGGCTGTACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGA 5633484 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 || | ||| ||||| |||| ||||| || | || | ||||||| ||| Sbjct 5633483 AGGCACGAGCCTCGGAATTTTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAA 5633424 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT 16694 | || ||||| ||| || || || || || | | |||| || | ||| ||| | Sbjct 5633423 CAATACCATCAGAAGCAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGT 5633364 Query 16695 CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 | || ||| ||||||| | ||||| || | || || ||||| | ||||| | Sbjct 5633363 GAGTTAGATTTTCCCAGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGA 5633304 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 |||| || | ||||| || ||||||| ||| || || Sbjct 5633303 AAGAGGCCTCGGCCTTCTTGTACATTTCCCAGATTTC 5633267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462491169615800