Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq34 87.8 1e-12 seq14 87.8 1e-12 >seq34 Length=5171523 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| || | || |||||||||||||| || || ||||| ||| Sbjct 2873697 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGTTCTGCTGACATG 2873756 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || || ||| ||||| |||||| || | |||| |||||||| ||| Sbjct 2873757 GGTCTTGGTGTGCCATTTAATGTTGCATCTTATGCTCTATTGACGTGCATGATTGCTCAT 2873816 Query 20551 GTT 20553 ||| Sbjct 2873817 GTT 2873819 >seq14 Length=8593181 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || | ||| || || || |||||||||||||| || || ||||| ||| Sbjct 3095223 CAGTTTTATGTGGTCAATGGGGAGTTATCTTGTCAAATGTATCAGCGCTCTGCTGACATG 3095282 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 3095283 GGTCTTGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTAACATGCATGATTGCTCAT 3095342 Query 20551 GTT 20553 ||| Sbjct 3095343 GTT 3095345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399166471206835