Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq50 111 1e-19 seq17 102 6e-17 seq143 100 2e-16 seq66 98.7 8e-16 seq30 96.9 3e-15 >seq50 Length=4141196 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||||||| || ||| | || || Sbjct 1513351 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCA 1513410 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| || | || ||| ||||| || || | ||||||||||||| | Sbjct 1513411 AGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGA 1513470 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||||||||||| || || ||||| Sbjct 1513471 ATCTTGGCCTTCACATTGTCGATGGTATCGGAGCTCTCCACCTCCAATGTGATGGTCTTA 1513530 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| || || ||||| Sbjct 1513531 CCGGTAAGAGTCTTCACGAAAATCTGCAT 1513559 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||| || |||||||||||| || | | |||| || ||||| Sbjct 1513812 GTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCTACCGTCCTCGAGTTG 1513871 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| || || Sbjct 1513872 CTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 1513931 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||| | ||| || |||||||| || Sbjct 1513932 GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTGCCGGT 1513991 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| Sbjct 1513992 CAATGTCTTGACAAAAATCTGCAT 1514015 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || | |||| || || || ||||||||||| Sbjct 1513596 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCTTCGAGCTGCTTTCCGGCGAA 1513655 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||| | || ||| |||||||| || | ||| ||||| || || || ||| || Sbjct 1513656 TATGAGCCTCTGCTGGTCGGGGGGGATACCTTCCTTATCTTGGATCTTAGCCTTCACGTT 1513715 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||| | ||| || |||||||| |||| ||||| || Sbjct 1513716 ATCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 1513775 Query 45325 AAAGATTTGCATG 45337 ||||||||||||| Sbjct 1513776 AAAGATTTGCATG 1513788 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||| ||| || ||| | || || || || Sbjct 1513128 GTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGCCCATCCTCAAGCTG 1513187 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| ||||| | ||||||||||||| || || Sbjct 1513188 CTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 1513247 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||| | || | || | | ||| | ||||||||||| || || ||||| |||| Sbjct 1513248 CGCCTTCA-CGTTGTCAATCGTATCCGAGCTCTCCACCTCCAGTGTGATGGTCTTCCCCG 1513306 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||||||||| Sbjct 1513307 TCAATGTCTTCACGAAGATTTGCAT 1513331 >seq17 Length=7869039 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||| || || |||| | || || Sbjct 3556959 ACCAAGTGCAGCGTAGACTCCTTCTGTATGTTGTAATCAGCCAAGGTGCGACCATCCTCG 3557018 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || || | || ||| || || || || | |||||| |||||| | Sbjct 3557019 AGCTGCTTTCCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCTTTGTCCTGA 3557078 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||| ||||||| ||| || || || Sbjct 3557079 ATCTTCGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACCTCCAGGGTGATGGTTTTC 3557138 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| || || ||||| Sbjct 3557139 CCAGTTAGAGTCTTCACGAATATCTGCAT 3557167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | || | ||| || ||| ||||||||| |||||||| || | Sbjct 3558081 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 3558140 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || ||||| || ||||| ||||||| ||| ||||| || || Sbjct 3558141 AACGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 3558200 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| ||||| ||| || | | | |||| | ||| || Sbjct 3558201 ATTCCCTCCTTGTCTTGGATTTTAGCCTTTACATTATCAATGGTGTCAGAGCTCTCAACT 3558260 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || || ||||| |||||||| ||||| Sbjct 3558261 TCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTAACAAAGATCTGCAT 3558307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||||||||| || || || | |||| | || || || || Sbjct 3556736 GTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCCAATGTGCGACCATCTTCGAGCTG 3556795 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | || ||| || || || || | ||||| ||||| || || Sbjct 3556796 CTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATCCCCTCTTTGTCTTGGATCTT 3556855 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| || ||| ||||| | ||| |||||||| || || Sbjct 3556856 AGCCTTCACATTGTCGATGGTGTCTGAACTCTCAACCTCAAGGGTGATCGTCTTCCCAGT 3556915 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||||||||| || ||||| Sbjct 3556916 CAGGGTCTTCACAAAAATCTGCAT 3556939 >seq143 Length=1536321 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGT 45185 |||||||| || || ||||||||||||||||||||| || ||| || | || | Sbjct 384380 ACCAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCCAAGGTT--CGGCCATCCT 384437 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || ||||| || ||||| || | || ||| ||||| || || | ||||||||||||| Sbjct 384438 CAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCT 384497 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | |||| || ||| ||||||| ||| || |||| Sbjct 384498 GGATCTTGGCCTTTACGTTGTCGATCGTGTCGGAACTCTCTACCTCCAGGGTGATAGTCT 384557 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || || || ||||| Sbjct 384558 TGCCGGTAAGGGTCTTGACGAAAATCTGCAT 384588 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| || ||||| ||| ||| || | || || || || Sbjct 384157 GTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCCAGAGTACGCCCATCCTCAAGCTG 384216 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| || | ||||| ||||| ||||| | |||||||||||| ||||| Sbjct 384217 CTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATTTT 384276 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | ||||||||||| || || ||||| || || Sbjct 384277 CGCCTTGACATTATCAATCGTGTCCGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCTGT 384336 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| || |||||||| Sbjct 384337 CAGGGTCTTCACGAAAATTTGCAT 384360 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||||||| || | | || || ||||| Sbjct 384613 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTTCCATCTTCGAGTTG 384672 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||||| || ||||| || || | ||||||||||||| || || Sbjct 384673 CTTTCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTT 384732 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||| ||||| | || || |||||||| || Sbjct 384733 GGCCTTGACGTTATCGATGGTGTCCGAGCTCTCGACCTCAAGAGTGATGGTCTTGCCAGT 384792 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||| || || || ||||| Sbjct 384793 CAAAGTCTTGACGAAAATCTGCAT 384816 >seq66 Length=3234583 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||| || |||||||||||| ||| | | || || Sbjct 1444511 ACCAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTCG 1444570 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| || || || | ||||||||||||||||| | || ||||||||| | Sbjct 1444571 AGCTGTTTTCCAGCAAAAATGAGACGCTGTTGGTCGGGAGGAATCCCTTCCTTGTCCTGA 1444630 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| || ||||| | ||| |||||||| Sbjct 1444631 ATCTTGGCCTTCACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTC 1444690 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || || ||||| ||||||||||| || Sbjct 1444691 CCTGTTAGGGTTTTCACGAAGATTTGCATCTT 1444722 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| | | || || Sbjct 1476006 ACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTCG 1476065 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| || || || | ||||||||||| ||||| | || ||||||||| | Sbjct 1476066 AGCTGTTTTCCAGCAAAAATGAGGCGCTGTTGGTCAGGAGGAATCCCTTCCTTGTCCTGA 1476125 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| || ||||| | ||| |||||||| Sbjct 1476126 ATCTTGGCCTTCACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTC 1476185 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||||||||| Sbjct 1476186 CCTGTTAGGGTTTTCACGAAGATTTGCAT 1476214 >seq30 Length=5940761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||||||||||||||| || |||| | || || | Sbjct 3345493 CAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCATCCTCAA 3345552 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 |||| || ||||| || || | || ||| || || || || | ||||| |||||| || Sbjct 3345553 GTTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCTTTGTCCTGAA 3345612 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | | | || | ||||||||||| || |||||||| | Sbjct 3345613 TCTTAGCCTTAACATTGTCTATGGTATCAGAGCTCTCCACCTCCAGTGTGATCGTCTTCC 3345672 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||||| ||||| ||||| Sbjct 3345673 CTGTCAAGGTCTTCACGAAGATCTGCAT 3345700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||| ||| ||||| || ||||||||||| || |||| | || ||| Sbjct 3345720 ACCAGATGCAATGTGGATTCCTTTTGTATGTTGTAGTCAGCCAAGGTGCGACCATCCTCC 3345779 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || ||||||| || ||| ||||| || || | ||||| |||||| | Sbjct 3345780 AGCTGCTTCCCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGA 3345839 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || | ||| ||||| | || || || || Sbjct 3345840 ATCTTTGCCTTCACGTTGTCAATGGTATCTGAGCTCTCAACCTCTAGAGTGATGGTTTTC 3345899 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||||||||| || ||||| Sbjct 3345900 CCGGTCAGGGTCTTCACAAAAATCTGCAT 3345928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395057851630663