Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq50 89.7 4e-13 seq1 86.0 5e-12 >seq50 Length=4141196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| ||| | || || | ||| || || ||||| ||||| |||||||||||||| Sbjct 1513789 CCTCCCCTTAGACGGAGCACAAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCA 1513848 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| || || | ||| || || || |||| | | || || ||| || Sbjct 1513849 AGGGTTCTACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGAGGA 1513908 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | |||||| | | | ||||| | |||| Sbjct 1513909 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACC 1513968 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | |||||||||||||| || |||||||| ||||| Sbjct 1513969 TCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAAATCTGCAT 1514015 >seq1 Length=14325340 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| ||| | || ||||| ||||| |||||||| || || Sbjct 9211665 TCCGCCCCTAAGCCTCAGGACCAGGTGCAAGGTCGATTCCTTTTGGATGTTGTAATCTGC 9211724 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||||||||| || ||| | || |||||||||||||| ||| Sbjct 9211725 AAGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAAATTAGTCTTTGTTGATCAGGGGG 9211784 Query 18218 CACGCCTTCCTTATC 18232 | ||| ||||| || Sbjct 9211785 AATGCCCTCCTTGTC 9211799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379327342412235