Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 150 2e-31 seq27 100 4e-16 seq257 91.5 2e-13 >seq8 Length=10307871 Score = 150 bits (166), Expect = 2e-31 Identities = 587/912 (64%), Gaps = 18/912 (2%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| |||||||| || || | ||| ||||| ||||| ||||| || | ||| || || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| ||||||||||||| ||| ||||| || ||| | ||||||| || | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| | ||| || ||||| || ||||| |||||| ||||| ||||| || | | Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 33470 TTTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 | || | || | | | || | ||| | | | || ||| || || | | | | Sbjct 4255996 CGCACACGGCAATGCGTCGCA-CACGAACTCCCT-CTCGATGTCCACTGCGTCGGCAACA 4256053 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATG---TAATAAATGTTTAAACATCAAACAT 33584 || | || || |||||| || || || || | | | | || ||| Sbjct 4256054 ATTCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGT---AGAGCAGACAC 4256110 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 |||||||||||||| || ||||||||||| || || ||||| || || || | || Sbjct 4256111 GCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCC 4256170 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| ||||| ||||| || | ||| ||||| | | ||| ||||| ||||| || Sbjct 4256171 GGCATCAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATC 4256230 Query 33705 CCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGCTGTCATGTAT 33760 || || || ||| || || || || || | ||| | | ||| | ||| || Sbjct 4256231 CCCTCGAC-GCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGTC---GAT 4256286 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | | ||||| ||||| || || || || || | || || || || || Sbjct 4256287 CCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAA 4256346 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 || | | || || ||| || | || | || | ||| || || ||||| || Sbjct 4256347 CAGGCGGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTC 4256406 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || || ||||| ||||| || || || || ||||| || | ||||||| || || Sbjct 4256407 GGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTG 4256466 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 ||||| | || || | || | ||||| || || || ||| || || || Sbjct 4256467 GACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAA 4256526 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 || |||| |||||| | || || | ||| ||||| | ||||| | | ||| | | Sbjct 4256527 GAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACG 4256586 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 || ||||| || | ||| |||||||| | ||||| || || || || || || || || Sbjct 4256587 GAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTA 4256646 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180 ||| | ||| || | ||||||| |||||||| ||| || | || ||| | || || Sbjct 4256647 CATTTCCCATATTTGGGGATATTGAATTGGGAACATACAGAACCGATCTGGGCTCGGAGC 4256706 Query 34181 AAGGATAGGTTC 34192 || ||||| || Sbjct 4256707 GAGAATAGGCTC 4256718 >seq27 Length=6178458 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || |||| |||| | || | || |||||| | |||||| Sbjct 1665526 TCCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACC 1665467 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| ||||| ||||||| | | |||||||||||||| || || Sbjct 1665466 ATTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGA 1665407 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| ||| | || ||| || || || ||||| || Sbjct 1665406 AACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATAT 1665347 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 ||||| || |||||||| ||||| Sbjct 1665346 TCCTTCAATACTATCATCTTTCATG 1665322 Score = 100 bits (110), Expect = 4e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCT 63220 || || || ||| ||||||||||| ||| ||||| || |||||| || | | || | Sbjct 1666029 TCCCTCTCATATTTAGTATACAATCTTTCAAACTCCTCGCCCCAA-CAGTCTGACAGCCC 1665971 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 |||| |||| || || | ||| ||||| | || ||| | |||| || |||||| Sbjct 1665970 AGGAGCCTCATTGGGGCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAA 1665911 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 |||||| |||||||||||||| ||||||||| |||| || |||||| || | || || Sbjct 1665910 GAGATCGGGAATCCAAAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 >seq257 Length=623575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||||||||| | || | ||| |||| ||| | || | || |||||||| |||||| Sbjct 424937 TCCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACC 424878 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| ||||| | || || | | | |||| ||||||||| || || Sbjct 424877 ATTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGA 424818 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 424817 AACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || || |||||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629789234589840