Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 149 6e-31 >seq6 Length=10738081 Score = 149 bits (164), Expect = 6e-31 Identities = 391/590 (66%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || || ||||| || || || || |||||||| ||| | || || ||||||||||| Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAAAGAA 11748 || |||||||| || ||||| || | ||| ||||| || ||||| | ||||| ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCCAGAGAAGAA 5633702 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC---ATATACCTTGTTGCTAGA 11805 ||| ||||| || || || || |||| | ||| | | || || || || Sbjct 5633701 TATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTA-- 5633644 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| | ||| | ||||||||||| ||||| || || || || |||| Sbjct 5633643 -ATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTG 5633585 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | | | |||| || ||| | | || | |||| || | || ||||| Sbjct 5633584 AAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACAT 5633525 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 || ||||| || || || || |||||||| || || ||||| || ||||| ||| Sbjct 5633524 CTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATT 5633465 Query 11986 CTGTACATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || || ||| ||| | || | || || | |||||||||||| || | Sbjct 5633464 TTGAACTTCTTTCATGAAA-CGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAG 5633406 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 | || || || || | | | | || |||| ||| ||| | | ||||| || ||||| | Sbjct 5633405 CGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGT 5633346 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 || || ||||| || | || |||||||| ||||||| ||| ||| | | | | Sbjct 5633345 CACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCT 5633286 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 | ||||||| |||||| ||| | || | ||| ||||| ||| ||| ||| Sbjct 5633285 TGTACATTTCCCAGATTTCAGGGTATTGAATTGGGAACATACAGAATCTA 5633236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468503698814320