Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 179 5e-40 seq8 147 3e-30 seq257 113 6e-20 seq27 113 6e-20 >seq6 Length=10738081 Score = 179 bits (198), Expect = 5e-40 Identities = 401/598 (67%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| | ||||||||||| || || ||||| ||||| || | Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| | || || || || | ||| ||||| | |||||| | | ||||| ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCG-CGCAAAAGCTGCCAGAGAAGAA 5633702 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 36333 || || || || || ||||| | || | || | || | | |||| | Sbjct 5633701 TATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTA-- 5633644 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | | ||| | || ||||||| || ||||| || ||||| || || | Sbjct 5633643 -ATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTG 5633585 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||| ||| |||||| || ||| || | || | || | ||| || || ||||| Sbjct 5633584 AAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACAT 5633525 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 |||||||| ||||| || || || ||||| || |||||||| | |||||||| | | Sbjct 5633524 CTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATT 5633465 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || |||||| | || || || | ||||| | || || || ||| || || Sbjct 5633464 TTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGC 5633405 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 || || || | ||| | | || || | ||| ||| | ||||| || | ||| || Sbjct 5633404 GAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGTC 5633345 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | | ||||| || | || |||||||| | ||||| || || ||||| ||||| || Sbjct 5633344 ACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 5633285 Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTT 36751 ||||| | |||||| ||| | ||||||||||| || ||| ||||||| | ||||| Sbjct 5633284 GTACATTTCCCAGATTTCAGGGTATTGAATTGGGAACATACAGAATCTATCTGGATTT 5633227 >seq8 Length=10307871 Score = 147 bits (162), Expect = 3e-30 Identities = 565/877 (64%), Gaps = 18/877 (2%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| |||||||| || || | ||| ||||| ||||| ||||| || | || || || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| || ||||| ||| || || || ||| | ||||||| || | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||| | ||| || || || || ||||| |||||| ||||| ||||| || | | Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 36046 TTTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 36103 | || | || | | | || | ||| | | | | | || || ||||| | | | Sbjct 4255996 CGCACACGGCAATGCGTCGCAC-ACGAACTCCCTCT-CGATGTCCACTGCGTCGGCAACA 4256053 Query 36104 ATAGATATTACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTAAACATCAAACAT 36160 || | ||| || |||||| || | | || || | | | | || ||| Sbjct 4256054 ATTCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGT---AGAGCAGACAC 4256110 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 ||||||||||||||||| ||||||||||| || || ||||| || || || | || Sbjct 4256111 GCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCC 4256170 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAAT 36279 ||||| ||||| ||||| || | ||| ||||| | | || | | | || || ||||| || Sbjct 4256171 GGCATCAGGCCGCGCTTCTTCAACCAGAATATCG-CACAGAAGCTGCCGGAGAAGAATAT 4256229 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTAT 36336 || || || || || || || || | ||| | | ||| || ||| || Sbjct 4256230 CCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGTCG---AT 4256286 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| | | ||||| ||||| || || || || || | ||||| || || || Sbjct 4256287 CCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAA 4256346 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || | | || || ||| || | |||| || | ||| || || ||||| || Sbjct 4256347 CAGGCGGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTC 4256406 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || ||||| ||||| || ||||| || ||||| || | ||||||| || || Sbjct 4256407 GGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTG 4256466 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 ||||| | || || | || | ||||| || || |||||| || || || Sbjct 4256467 GACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAA 4256526 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || |||| |||||| | || || | ||| |||| | ||||| | | ||| | | Sbjct 4256527 GAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACG 4256586 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 || ||||| || | ||| |||||||| | ||||| || || || || || || || || Sbjct 4256587 GAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTA 4256646 Query 36697 CATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 ||| | ||| || | ||||||||||||| || ||| Sbjct 4256647 CATTTCCCATATTTGGGGATATTGAATTGGGAACATA 4256683 >seq257 Length=623575 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||||||||| | || | ||| |||| ||| | || | || |||||||| |||||| Sbjct 424937 TCCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACC 424878 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || | || || || | | | || ||||||||| || || Sbjct 424877 ATTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGA 424818 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 424817 AACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||| ||||||||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 >seq27 Length=6178458 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || |||| |||| | || | || |||||| | |||||| Sbjct 1665526 TCCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACC 1665467 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || |||||||| | | | |||||||||||| || || Sbjct 1665466 ATTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGA 1665407 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || ||| || || |||||||| || Sbjct 1665406 AACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATAT 1665347 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 1665346 TCCTTCAATACTATCATCTTTCATG 1665322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGG 66028 |||||||||| ||| ||||| || |||||| || | | || |||||| |||| || Sbjct 1666014 GTATACAATCTTTCAAACTCCTCGCCCCAA-CAGTCTGACAGCCCAGGAGCCTCATTGGG 1665956 Query 66029 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 || | ||| ||||| | || ||| | |||| || |||||||||||| |||||||| Sbjct 1665955 GCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAAGAGATCGGGAATCCA 1665896 Query 66089 AAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 |||||| ||||| ||| || | || |||||| || | || || Sbjct 1665895 AAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658143157542520