Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 seq66 104 2e-17 seq6 102 8e-17 seq17 98.7 1e-15 seq50 89.7 5e-13 seq97 86.0 6e-12 >seq8 Length=10307871 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTT 139613 ||| ||||| | ||||| || || || || || ||||| ||| | |||| ||| | Sbjct 8849547 AACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCAGCT-AGGGTGCGGCCGTCCT 8849489 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 ||||||| || || || |||| || ||||||||||||||||||||||| |||||||| Sbjct 8849488 CGAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGTATGCCCTCTTTGTCTT 8849429 Query 139674 TGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 ||| || || | | || | ||||| | || || ||||||| ||| | |||| Sbjct 8849428 GGATCTTCGTCTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCAAGGGTTATGGTCT 8849369 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | ||||| | ||||||||||| || ||||| ||| Sbjct 8849368 TCCCGGTTAGGGTTTTTACGAAGATCTGCATGGCT 8849334 >seq66 Length=3234583 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| ||||| ||||| || ||| | ||| || ||||| Sbjct 1444510 AACCAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTC 1444569 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| |||||| | || ||||| || || |||||||| || ||||| ||||| | Sbjct 1444570 GAGCTGTTTTCCAGCAAAAATGAGACGCTGTTGGTCGGGAGGAATCCCTTCCTTGTC-CT 1444628 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||| | | || ||||| | ||| | ||||| Sbjct 1444629 GAATCTTGGCCTTCACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCT 1444688 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | ||||| ||||| |||||||| Sbjct 1444689 TCCCTGTTAGGGTTTTCACGAAGATTTGCAT 1444719 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| || || ||||| || ||| | ||| || ||||| Sbjct 1476005 AACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTC 1476064 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| |||||| | || || || || || || ||||| || ||||| ||||| | Sbjct 1476065 GAGCTGTTTTCCAGCAAAAATGAGGCGCTGTTGGTCAGGAGGAATCCCTTCCTTGTC-CT 1476123 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||| | | || ||||| | ||| | ||||| Sbjct 1476124 GAATCTTGGCCTTCACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCT 1476183 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | ||||| ||||| |||||||| Sbjct 1476184 TCCCTGTTAGGGTTTTCACGAAGATTTGCAT 1476214 >seq6 Length=10738081 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | |||| ||| || ||||| || || || |||||| | Sbjct 270638 CCTCCTCTGAGACGAAGAACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCC 270697 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || || |||| || ||||||||||||||||| Sbjct 270698 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGG 270757 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 270758 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAGGACTCAACC 270817 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || || || || | ||||||||||| || ||||| ||| Sbjct 270818 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTTACGAAGATCTGCATGGCT 270868 >seq17 Length=7869039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || |||||||||||||| | Sbjct 3556713 CCACCACGCAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCC 3556772 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||||||||| || |||||| |||| || | |||||||| || || Sbjct 3556773 AATGTGCGACCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGG 3556832 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || || | | || | ||||| | ||| ||| Sbjct 3556833 ATCCCCTCTTTGTCTTGGATCTTAGCCTTCACATTGTCGATGGTGTCTGAACTCTCAACC 3556892 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||| || |||| || || || || || ||||| Sbjct 3556893 TCAAGGGTGATCGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 3556939 >seq50 Length=4141196 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || || |||||||||||| || || Sbjct 1513591 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCTTCGAGCTGCTTTCCG 1513650 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || || | ||||| ||||| || || ||||| || || ||| || || Sbjct 1513651 GCGAATATGAGCCTCTGCTGGTCGGGGGGGATACCTTCCTTATCTTGGATCTTAGCCTTC 1513710 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||||| ||| | |||||||||||||| || Sbjct 1513711 ACGTTATCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 1513770 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 1513771 TTGACAAAGATTTGCAT 1513787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || | || ||| | || | ||| | || || || ||||| ||||| || ||| Sbjct 1513788 GCCTCCCCTTAGACGGAGCACAAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGC 1513847 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||| ||||| || || || || |||||| ||| ||||| || ||||| Sbjct 1513848 AAGGGTTCTACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGAGG 1513907 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| | ||| || Sbjct 1513908 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 1513967 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||||||||| || || || || || ||||| Sbjct 1513968 CTCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAAATCTGCAT 1514015 >seq97 Length=2389559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || ||||||||||| || || || || || || ||||| || ||| Sbjct 873532 GTAGACTCCTTCTGAATGTTATAGTCAGCCAAGGTCCTGCCATCCTCTAGCTGCTTTCCA 873591 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | ||||| | ||||| || || || || || || ||||| ||| ||| ||| Sbjct 873592 GCAAAAATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTG 873651 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| ||||||| ||| | ||||| || || | ||| Sbjct 873652 ACATTATCAATCGTATCTGAGCTCTCAACCTCAAGGGTTATGGTCTTTCCAGTAAGCGTC 873711 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || |||||||| Sbjct 873712 TTTACAAAAATTTGCAT 873728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496041658517600