Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 141 1e-28 seq257 113 6e-20 seq27 113 6e-20 >seq8 Length=10307871 Score = 141 bits (156), Expect = 1e-28 Identities = 565/877 (64%), Gaps = 18/877 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| |||||||| || || | ||| ||||| ||||| ||||| || | ||| || || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| ||| || || || ||| | ||||||| || | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA 49846 ||| | ||| || || || || ||||| |||||| ||||| ||||| || | || Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 49847 GTTTAACTGGAA-GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 || | || | | |||| | ||| | | | || ||| || || || | | | Sbjct 4255996 CGCACACGGCAATGCGTCGCA-CACGAACTCCCT-CTCGATGTCCACTGCGTCGGCAACA 4256053 Query 49906 ATAGATCTAACGGTTTCTTCACTCGGTGGATG---CAATAAATGTTTAAACATCAAACAT 49962 || | || || |||||| || || ||| || | | | | || ||| Sbjct 4256054 ATTCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGT---AGAGCAGACAC 4256110 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||||||||| || ||||||||||| || | ||||| || || || | || Sbjct 4256111 GCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCC 4256170 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGAT 50081 ||||| ||||| ||||| || | ||| ||||| | | || || || || ||||| || Sbjct 4256171 GGCATCAGGCCGCGCTTCTTCAACCAGAATATCG-CACAGAAGCTGCCGGAGAAGAATAT 4256229 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCGCTGTCATGTAT 50138 || || || ||| || || | || | ||| | | | | || | ||| || Sbjct 4256230 CCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGTC---GAT 4256286 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| | | ||||| ||||| || || || || || | || || || || || Sbjct 4256287 CCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAA 4256346 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || | | || || ||| || | || | || | ||| || || ||||| || Sbjct 4256347 CAGGCGGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTC 4256406 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || ||||| ||||| || || || || ||||| || | ||||||| || || Sbjct 4256407 GGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTG 4256466 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 ||||| | || || |||| | ||||| || || |||||| || || || Sbjct 4256467 GACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAA 4256526 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || |||| |||||| | || || ||||| |||| | ||||| | | ||| | | Sbjct 4256527 GAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACG 4256586 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || ||||| || | ||| |||||||| | ||||| || || || || || || || || Sbjct 4256587 GAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTA 4256646 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| | ||| || | ||||||| |||||||| ||| Sbjct 4256647 CATTTCCCATATTTGGGGATATTGAATTGGGAACATA 4256683 >seq257 Length=623575 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||||||||| | || | ||| |||| ||| | || | || |||||||| |||||| Sbjct 424937 TCCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACC 424878 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || | || || || | | |||| ||||||||| || || Sbjct 424877 ATTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGA 424818 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 424817 AACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| || |||||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 >seq27 Length=6178458 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || |||| |||| | || | || |||||| | |||||| Sbjct 1665526 TCCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACC 1665467 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || |||||||| | | |||||||||||||| || || Sbjct 1665466 ATTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGA 1665407 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || ||| || || |||||||| || Sbjct 1665406 AACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATAT 1665347 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 1665346 TCCTTCAATACTATCATCTTTCATG 1665322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/183 (73%), Gaps = 10/183 (5%) Strand=Plus/Minus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT--- 79890 || || || |||| ||||| |||| ||| ||||| || |||||| || |||| | Sbjct 1666029 TCCCTCTCATATTTAGTATACAATCTTTCAAACTCCTCGCCCCAA-CA--GTCTGACAGC 1665973 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCA 79948 |||||| || | || || | ||| ||||| | |||||| |||| |||| || || Sbjct 1665972 CCAGGAGCCTCATTGGGGCAAAACAAGGACCATTGCCCATCA--CTTTGAACTCTTTCCA 1665915 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 |||||||||| |||||||||||||| ||||||||| || | || ||| || || | || Sbjct 1665914 TAAAGAGATCGGGAATCCAAAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTC 1665855 Query 80009 CTG 80011 || Sbjct 1665854 GTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236450968920