Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6 102 8e-17 >seq6 Length=10738081 Score = 102 bits (112), Expect = 8e-17 Identities = 366/562 (65%), Gaps = 13/562 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || || ||||| || || | ||||| ||||| || | ||||||||||||||||| Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG-ACCCGGAAAAGAA 13990 || |||||||| || ||||| || ||||| ||||| || ||||| | || || ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCCAGAGAAGAA 5633702 Query 13991 TATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14049 ||| ||||| || ||| || || || | || ||||| | || ||| | || | Sbjct 5633701 TATCCCCTCGAC-GCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTG---G 5633646 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 ||||| | ||| | || ||| |||| | || || || ||||| || | Sbjct 5633645 TAATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGT 5633586 Query 14110 TAAATAAATATTCCTTCTC--TTTAGTACTTGAAATGTATGTATC-AATAAGTAAGCTAT 14166 ||| | | | ||||| | | |||| ||||| | || || ||| | ||| | Sbjct 5633585 GAAACAGACGGTTTTTCTCGGCTGCATCCTTG--ATGTAGGATTCTAACAAG-AGGCTGT 5633529 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 |||| || || || ||||| || || ||||| || ||||| || ||| | ||| || | Sbjct 5633528 ACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGG 5633469 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 | ||| ||||| || | ||||| ||||| |||| ||||||||| || Sbjct 5633468 AATTTTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAG 5633409 Query 14287 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14346 | || || || || | | |||| |||| || ||| | | | || |||| || Sbjct 5633408 CAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCC 5633349 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 | || || ||| | || || || ||||| || | ||||| ||| || | || | Sbjct 5633348 AGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCT 5633289 Query 14407 TTTTATACATTACCCATATTTC 14428 | || |||||| |||| ||||| Sbjct 5633288 TCTTGTACATTTCCCAGATTTC 5633267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479706394250200