Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6 102 8e-17 >seq6 Length=10738081 Score = 102 bits (112), Expect = 8e-17 Identities = 366/562 (65%), Gaps = 13/562 (2%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || || ||||| || || | ||||| ||||| || | ||||||||||||||||| Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 13778 || |||||||| || ||||| || ||||| ||||| || || || | | || || ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCCAGAGAAGAA 5633702 Query 13779 TATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG 13837 ||| ||||| || ||| || || || | ||| ||||| | || ||| | || | Sbjct 5633701 TATCCCCTCGAC-GCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTG---G 5633646 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 ||||| | ||| | || ||| |||| | || || || || ||||| | Sbjct 5633645 TAATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGT 5633586 Query 13898 TGAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATC-AATAAGTAAGCTAT 13954 || | | | | ||||| | | |||| ||||| | || || ||| | ||| | Sbjct 5633585 GAAACAGACGGTTTTTCTCGGCTGCATCCTTG--ATGTAGGATTCTAACAAG-AGGCTGT 5633529 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || || || ||||| || || ||||| || ||||| || || | ||| || | Sbjct 5633528 ACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGG 5633469 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 | ||| || || || | |||| |||||| |||||||||||||| || Sbjct 5633468 AATTTTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAG 5633409 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 | || || || || | | |||| |||| || ||| | | | || |||| || Sbjct 5633408 CAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCC 5633349 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 | || || ||| | || || || ||||| || | ||||| ||| || | || | Sbjct 5633348 AGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCT 5633289 Query 14195 TTTTATACATTACCCATATTTC 14216 | || |||||| |||| ||||| Sbjct 5633288 TCTTGTACATTTCCCAGATTTC 5633267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478567245556920