Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8 109 6e-19 seq6 93.3 4e-14 seq97 91.5 1e-13 seq50 82.4 8e-11 >seq8 Length=10307871 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 ||||||| | || | ||| || || | |||||||| || || || |||||||| ||| Sbjct 8849564 CCTCCTCTGAGTCGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 8849505 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| ||||| || || || || |||| || ||||||||||||||||| Sbjct 8849504 -AGGGTGCGGCCGTCCTCGAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGG 8849446 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||| |||||||| || || || | | || | ||||| | || ||| || Sbjct 8849445 TATGCCCTCTTTGTCTTGGATCTTCGTCTTCACATTGTCGATGGTGTCTGAGGATTCAAC 8849386 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | ||||| ||||| | ||||||||||| || ||||| ||| Sbjct 8849385 CTCAAGGGTTATGGTCTTCCCGGTTAGGGTTTTTACGAAGATCTGCATGGCT 8849334 >seq6 Length=10738081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| | ||||| || |||||||| || || ||||||||| | Sbjct 270638 CCTCCTCTGAGACGAAGAACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCC 270697 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || || || || || || |||| || ||||||||||||||||| Sbjct 270698 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGG 270757 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| || || || | | || | ||||| | || || || Sbjct 270758 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAGGACTCAACC 270817 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || || | ||||||||||| || ||||| ||| Sbjct 270818 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTTACGAAGATCTGCATGGCT 270868 >seq97 Length=2389559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || ||||| | ||||||||| || ||||||||||||||| | Sbjct 873046 CCACCACGTAGACGAAGCACCAAATGCAATGTAGATTCCTTCTGTATGTTGTAATCGGCC 873105 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | || || |||||| | || || | |||||||| || || Sbjct 873106 AAAGTGCGTCCA-TCTTCCAACTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCAGGTGG 873164 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| ||| || | | || | || || | | ||||| Sbjct 873165 AATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCTGAGCTCTCTAC 873224 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || || || || |||||| Sbjct 873225 CTCCAGAGTAATTGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCATA 873273 >seq50 Length=4141196 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | || ||| | || | || | || ||||| ||||| |||||||| ||| Sbjct 1513788 GCCTCCCCTTAGACGGAGCACAAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGC 1513847 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||| |||||||| || || || |||||| ||| ||||| || ||||| Sbjct 1513848 AAGGGTTCTACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGAGG 1513907 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||| | | || || Sbjct 1513908 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 1513967 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||||||||||||||| || || || || ||||| Sbjct 1513968 CTCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAAATCTGCAT 1514015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506991565338960