Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq8 89.7 8e-13 >seq6 Length=10738081 Score = 105 bits (116), Expect = 1e-17 Identities = 372/568 (65%), Gaps = 26/568 (5%) Strand=Plus/Plus Query 125015 TGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGA 125074 ||| || |||||||||||||| ||||| ||||||| || ||||| | |||||| || || Sbjct 5633266 TGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTTGA 5633325 Query 125075 TCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT 125134 || ||| | || || || ||||| | || | ||| | ||| | | || || Sbjct 5633326 CCTCTCCCAAGATCTACGTGACTGGGAAAATC---TAACTCACGGCGAGAAACACTTCAT 5633382 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 | | || | |||||||| || | || ||||| || || | ||| || ||| | Sbjct 5633383 TACTCTTGTTCTCGCCTTCTTCGCTGCTTCTGATGGTATTGTTATCGAAAACCTGGCCTC 5633442 Query 125195 ACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTG-CTTTTACGGATTCCAAATC 125252 || ||| ||| |||| | ||||| |||| ||||| ||| ||||| |||||||| Sbjct 5633443 TCGTTTCATGAAAGAAGTTCAAAATTCC-GAGG-CTCGTGCCTTCTACGGTTTCCAAATA 5633500 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTA----CTCTACACTGATTGACATGTACATTCG 125308 || |||||| | || ||||| ||||| |||| || | || ||||| Sbjct 5633501 GCAATCGAGAACATCCATTCGGAGATGTACAGCCTCT----TGTTAGAATCCTACATCAA 5633556 Query 125309 CGAT-CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 ||| | || | ||| || || ||| ||||||| || || | || | | | Sbjct 5633557 GGATGCAGCCGAG-AAAAACCGTCTGTTTCACGCAATTGAGACTATCCCTTGCGTGGAAA 5633615 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGAT--CGATGACGACAAGTCTTCGTACGCCGACAG 125425 | || ||||| ||| |||| ||||| | | || | || | |||||| | Sbjct 5633616 AGAAAGCTCAGTGGACACTTCGTTGGATTACCAGTTCGGAA-----TCTTTCGCCGAACG 5633670 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCT 125484 || || || |||||| ||| ||||| || ||||| || || || |||||| || || | Sbjct 5633671 TCTAGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCTGGCAGCTTTTGC-GCGATAT 5633729 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTC 125544 | ||| | ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 5633730 TCTGGTTGAAGAAACGCGGGTTGATGCCGGGGTTAACATTTTCAAACGAGTTGATATCAA 5633789 Query 125545 GAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||||||| | ||||| || || || Sbjct 5633790 GAGACGAGGGGTTGCACTGCGATTTCGC 5633817 >seq8 Length=10307871 Score = 89.7 bits (98), Expect = 8e-13 Identities = 366/560 (65%), Gaps = 18/560 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || || | |||||||| ||||| | |||||| || ||||| Sbjct 4256658 ATATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTCTGGACTGCCGAAGAAGTTGATCTC 4256599 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | || || | ||||| | | | || | ||| | | || || | Sbjct 4256598 TCCCAAGATCTCCGTCACTGGGAAATCC---TAACCCATGACGAGAAACACTTCATTACT 4256542 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | |||||||||| || | || || || || || ||| || || | || | || Sbjct 4256541 CATGTACTGGCCTTCTTCGCTGCTTCTGACGGTATTGTTCTCGAAAACCTCGCTG-CTCG 4256483 Query 125198 ATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 ||| | ||| | | ||| || | |||| ||||| |||||||| ||||||||| Sbjct 4256482 GTTCA-TGAAG-GAAGTCCAAATCTCCGAGGCC-CGTGCATTTTACGGTTTCCAAATCGC 4256426 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATG-TACATTCGCGATC 125313 ||||||||| | ||||| || |||||| | || ||| || ||||| ||| Sbjct 4256425 TATTGAGAACATCCACTCCGAGATGTACAGC-CTCTTGTTGGAATCATACATCAAGGATT 4256367 Query 125314 CGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 || || || | || | || ||||||||| || || || | | ||||| Sbjct 4256366 CGGC-CGAGAAGAGCCGCCTGTTCCGCGCAATCGAGACCGTCCCCTGCGTGGCGAAAAAA 4256308 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | | |||||||| | | | || | ||| || | ||| | Sbjct 4256307 GCCGAGTGGGCCCTCCAATGGATCGACGGTTCCGAATCCTT---CGCGGAGCGCCTGATC 4256251 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 ||||||||| ||| ||||| || ||||| || || || || || || || ||| | Sbjct 4256250 GCATTCGCCTGCGTCGAGGGGATATTCTTCTCCGGCAGCTTCTGTGCGATATTCTGGTTG 4256191 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||||||||| || ||||| || | || | |||||||| || || |||||||| Sbjct 4256190 AAGAAGCGCGGCCTGATGCCGGGCTTAACTTTCTCAAACGAGTTGATCTCGAGAGACGAG 4256131 Query 125553 GGCCTACACTGTGACTTTGC 125572 || |||||||| || || || Sbjct 4256130 GGGCTACACTGCGATTTCGC 4256111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025824546280