Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq22 116 3e-21 seq37 111 1e-19 seq31 107 1e-18 seq65 102 6e-17 seq97 95.1 9e-15 seq50 87.8 1e-12 seq143 82.4 6e-11 >seq22 Length=7127660 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| ||||||| | ||| | ||| |||||||| || || || ||||||||||| || Sbjct 3801404 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 3801345 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || ||| | || |||| |||||| ||||| | || | || || ||||| || Sbjct 3801344 AAG-GTTCGGCCATCCTCTAGTTGTTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGGGG 3801286 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| |||||| ||| ||| | || || || ||| |||| || Sbjct 3801285 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 3801226 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || ||||| ||||| || |||||||| ||||| Sbjct 3801225 CTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAAATCTGCAT 3801178 >seq37 Length=4974474 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| ||||| || || |||||||| || |||| | |||||| Sbjct 2662731 ACCAAGTGGAGGGTGGATTCTTTCTGAATATTGTAATCAGCCAGTGTTCTTCCATCTTCT 2662790 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | || || ||||| |||||||| || || || Sbjct 2662791 AGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGAAGGAATTCCCTCCTTATCCTGG 2662850 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || |||||| |||||| | ||||| ||||| | | || || ||||| ||||||||||| Sbjct 2662851 ATCTTTGCT-TTTACATTGTCTATAGTATCAGAACTCTCCACTTCTAAAGTAATGGTTTT 2662909 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| |||||||| || || Sbjct 2662910 CCCAGTCAGTGTTTTGACAAAAATCTGAAT 2662939 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 15164 AGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTGTTT 15222 |||||||| || || || ||||||||||| || || | | | || ||||||||||| Sbjct 2662968 AGGGTGGACTCCTTCTGAATGTTGTAATCTGCCAAGG-TACGGCCATCCTCTAATTGTTT 2663026 Query 15223 GCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCT 15282 ||||| |||| | | |||||||| ||| || |||| ||||| ||| || Sbjct 2663027 TCCAGCAAATATGAGCCTCTGTTGGTCAGGTGGGATGGCTTCCTTGTCCTGAATCTTAGC 2663086 Query 15283 CTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342 ||| ||| | |||||||| || ||||||| || | || || ||||| || | || Sbjct 2663087 CTTAACATTGTCTATGGTGTCTGAGCTTTCTACTTCAAGCGTGATAGTTTT-CCCGGAAG 2663145 Query 15343 AGTTTTTACAAAAATTTGCAT 15363 || || ||||| |||||||| Sbjct 2663146 CGTCTTAACAAAGATTTGCAT 2663166 >seq31 Length=5807843 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| ||||||| | ||| | ||| |||||||| || || || ||||||||||| || Sbjct 4127516 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 4127457 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || ||| | || |||| ||| || ||||| | || | || || ||||| || Sbjct 4127456 AAG-GTTCGGCCATCCTCTAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGGGG 4127398 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||| ||||| |||||| ||| ||| | || || || ||| ||||| || Sbjct 4127397 GGTTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTATCAATAGTGTCGGAGTTTTCAAC 4127338 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || ||||| ||||| || ||||| || ||||| Sbjct 4127337 CTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 4127290 >seq65 Length=3230173 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| ||||||| | ||| | ||| |||||||| || || || ||||||||||| || Sbjct 2676800 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 2676859 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || ||| | || || | ||| || ||||| | || | || || ||||| ||| Sbjct 2676860 AAG-GTTCGGCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGTGG 2676918 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| |||||| ||| ||| | || || || ||| |||| || Sbjct 2676919 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 2676978 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || ||||| || ||||| || ||||| Sbjct 2676979 CTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 2677026 >seq97 Length=2389559 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | ||||| || || || || |||||||| ||||||||||| Sbjct 873730 CCCCCTCTCAACCGAAGAACTAGGTGGAGTGTAGATTCTTTTTGAATGTTGTAATCAGCC 873789 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| || ||||| | ||||| | ||| ||||| || Sbjct 873790 AAAGTCCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGCTGGTCTGGGGGG 873849 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| |||||| || ||| | || || ||||| | | || || Sbjct 873850 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTATCAATTGTATCAGAACTCTCCACT 873909 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || | || || || || ||||| || || || ||||| |||||||| | ||||| Sbjct 873910 TCGAGAGTTATAGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCATCTGTGAAA 873964 >seq50 Length=4141196 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT-CGCTTAGAATTCTCGCGTCTT 15212 ||| || ||||||||||| || || || |||||||| | ||| || | | | || | Sbjct 1513350 AACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAG-GTGCGGCCATCCT 1513408 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||||| |||||| | || | | || ||||| ||| || || || ||||| Sbjct 1513409 CAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCT 1513468 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||| ||| ||| | || ||||||||| | || || || || || ||||| | Sbjct 1513469 GAATCTTGGCCTTCACATTGTCGATGGTATCGGAGCTCTCCACCTCCAATGTGATGGTCT 1513528 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || ||||| || || ||||| |||||| Sbjct 1513529 TACCGGTAAGAGTCTTCACGAAAATCTGCATA 1513560 >seq143 Length=1536321 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||||||| || | || |||| || | ||| Sbjct 384842 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTCCTGCCGTCCTCGAGTTGC 384901 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | ||| || ||||| || || || || ||||| || ||| Sbjct 384902 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 384961 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||| |||| || || | ||| ||||| ||||| ||| Sbjct 384962 GCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTACCGGTC 385021 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || ||||| Sbjct 385022 AAGGTCTTGACGAAGATCTGCAT 385044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362163296145423