Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq17 107 2e-18 seq30 93.3 4e-14 seq37 89.7 4e-13 seq22 89.7 4e-13 seq97 87.8 1e-12 seq6 84.2 2e-11 seq65 82.4 6e-11 >seq17 Length=7869039 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | ||| | ||||| ||||| |||||||||||| || || |||||||| | Sbjct 3556939 TTCCACCGCGAAGCCTGAGCACCAAGTGCAGCGTAGACTCCTTCTGTATGTTGTAATCAG 3556998 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | ||||| ||||| || || ||| |||| || ||||||||||| | Sbjct 3556999 CCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAAATGAGCCTCTGCTGATCTGGTG 3557058 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991 | | ||||||||||| ||| ||| || || | | | | ||||| | || ||| Sbjct 3557059 GGATACCCTCTTTGTCCTGAATCTTCGCCTTCACATTGTCAATGGTATC-CGAGCTCTCA 3557117 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || |||| ||| || || || || |||||| Sbjct 3557118 ACCTCCAGGGTGATGGTTTTCCCAGTTAGAGTCTTCACGAATATCTGCATT 3557168 >seq30 Length=5940761 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||| ||||||||||| || ||||||||||| || | ||| | ||||| Sbjct 3346176 ACCAGATGCAGGGTAGACTCCTTCTGGATATTGTAATCAGCAAGTGTCCGACCATCCTCG 3346235 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || || |||||||| || || | ||| || ||||| | Sbjct 3346236 AGCTGTTTCCCGGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGA 3346295 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| || || | | | ||||| ||| ||| | |||||||||||| Sbjct 3346296 ATTTTCGCCTTCACATTATCAATTGTATCAGAGCTCTCAACTTCAAGGGTAATGGTTTTT 3346355 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| |||||||| || ||||| Sbjct 3346356 CCGGTGAGAGTCTTGACAAAGATCTGCAT 3346384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| ||||||||||| || || |||||||| |||| || | | ||||| Sbjct 3346404 ACCAGGTGCAAGGTAGACTCCTTCTGGATGTTGTAATCTGCCAGGGTCCTTCCATCCTCA 3346463 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| |||| | || || || || ||| | |||||| ||||| | Sbjct 3346464 AGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 3346523 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | || ||| ||| ||| | || || || || Sbjct 3346524 ATCTTTGCCTTGACATTGTCAATCGTGTCGGAGCTCTCAACTTCAAGAGTGATTGTCTTT 3346583 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||| |||||||||||||||||| Sbjct 3346584 CCGGTGAGAGTCTTGACAAAAATTTGCATT 3346613 >seq37 Length=4974474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || || || |||||||||||||| |||| |||| | | || || Sbjct 2662731 ACCAAGTGGAGGGTGGATTCTTTCTGAATATTGTAATCAGCCAGTGTTCTTCCATCTTCT 2662790 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | || || | |||||| || || | ||||| || || Sbjct 2662791 AGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGAAGGAATTCCCTCCTTATCCTGG 2662850 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || |||||| | | | | |||||| | |||| ||| | ||||||||||| Sbjct 2662851 ATCTTTGCTTTTACATTGTCTATAGTATCAGAACTCTCCACTTCTAAAGTAATGGTTTTC 2662910 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||| || || Sbjct 2662911 CCAGTCAGTGTTTTGACAAAAATCTGAAT 2662939 >seq22 Length=7127660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || ||||||||||| || | || | | |||||| Sbjct 3802016 ACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCTAGGGTCCTTCCATCCTCC 3801957 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | ||||| ||||| ||||| || | ||||| ||||| Sbjct 3801956 AGCTGCTTCCCTGCAAAGATAAGCCTCTGTTGATCTGGTGGTATTCCCTCCTTGTCTTGG 3801897 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | ||| ||||| |||| ||| | ||||| || || Sbjct 3801896 ATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTCTCCACTTCCAAAGTAATCGTCTTC 3801837 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| || |||||||| |||||||| Sbjct 3801836 CCAGTTAGTGTCTTGACAAAGATTTGCAT 3801808 >seq97 Length=2389559 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | || | |||| ||||| ||||||||||| ||||| || || || ||| Sbjct 873502 CCTCCTCGAAGTCTAAGAACCAGATGCAAAGTAGACTCCTTCTGAATGTTATAGTCAGCC 873561 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||| ||||| || || ||| |||| || |||||||| || ||| Sbjct 873562 AAGGTCCTGCCATCCTCTAGCTGCTTTCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 873621 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || || ||| || | | | ||||| ||| Sbjct 873622 ATACCCTCCTTGTCCTGGATCTTTGCTTTGACATTATCAATCGTATCTGAGCTCTCAACC 873681 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| || || || | || || ||||||||||||||| Sbjct 873682 TCAAGGGTTATGGTCTTTCCAGTAAGCGTCTTTACAAAAATTTGCATT 873729 >seq6 Length=10738081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| || | ||| || || || || ||||||||||| |||| ||| | ||||||| Sbjct 270656 ACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCCAGGGTTCGGCCGTCCTCA 270715 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || ||||| | ||||| | |||||||| || | |||||||||||| Sbjct 270716 AGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGGATGCCCTCTTTGTCCTGG 270775 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| || || | | ||| || || | ||| || | ||| |||||||| Sbjct 270776 ATCTTCGCCTTCACATTGTCGATGGTGTCTGAGGACTCAACCTCTAGGGTTATGGTTTTC 270835 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||||| || || || ||||| Sbjct 270836 CCAGTTAGGGTTTTTACGAAGATCTGCAT 270864 >seq65 Length=3230173 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| ||||| || || || |||| ||| | | || || || || || || Sbjct 2676602 GTGGATTCCTTCTGAATGTTRTARTCAGCCAGTGTCCTACCATCTTCAAGTTGCTTTCCA 2676661 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||||||||||||||| || | || || ||||| || || || Sbjct 2676662 GCAAAGATAAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 2676721 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| ||||| | ||| || | ||||||||||| || |||| ||| Sbjct 2676722 ACATTGTCGATTGTATCAGAACTCTCAACCTCCARAGTAATGGTTTTCCCGGTTAGAGTC 2676781 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||| ||||||||| Sbjct 2676782 TTGACAAAGATTTGCATT 2676799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414554595460582