Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 >seq6 Length=10738081 Score = 122 bits (134), Expect = 8e-23 Identities = 553/861 (64%), Gaps = 23/861 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || || ||| ||||| |||| ||| | ||| ||||| || || || || ||| Sbjct 5634126 GACATGACCGAAGCTTTCTGATAGTCGCCAACCCGTTTCTCAAAGAAATTGGTCTTCCCT 5634067 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC-- 12962 | ||| ||||| ||||| |||| ||||| || | ||||| | |||| | || | Sbjct 5634066 TGTAAAGAAATCAACTCCATCCAATCAAAAGGGTTCT--GAACATT-GTATATCTTTCCG 5634010 Query 12963 -ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || || | ||| || || || || ||||| |||||||| |||| | |||| Sbjct 5634009 TATCCCAAGGCTCCAAGCAACCTATCGGCCACGAACTCGATGTACTGACTCATCAGATCA 5633950 Query 13022 CAGTTCATTCCTATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||||||||| | ||| ||| || | || || || || | | || || || Sbjct 5633949 GCGTTCATTCCCACTAACGC-ACATGGTAATGCGTCGCATACGAACTCCCTCTCGATTTC 5633891 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--AGATGC 13138 || ||||| ||| || || | | | || ||| | | || | || | | | | Sbjct 5633890 CACCGCTTCCGCAACGATTCCTTTCACT-CGCTCTTCACTC-AGCTTCTGCTTCAAAAAC 5633833 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | | | || || || ||||| |||||||| || || ||||| ||| | ||||||| Sbjct 5633832 TCGTATAGCAGGCAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTT 5633773 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG-A 13257 |||||||||| |||||||| | ||| ||||| || | ||| ||||| || ||||| | Sbjct 5633772 GAAAATGTTAACCCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCT 5633714 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 || || || ||||| || || || || || || | | | ||| || | Sbjct 5633713 GCCAGAGAAGAATATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTC----GGCGAAAG 5633658 Query 13318 ATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 ||| ||| ||||| | ||| | ||||| | || ||||| ||| Sbjct 5633657 ATTCCGAACTGGTAATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAG 5633598 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCTAT 13434 | || ||||||| ||| | | ||||| || ||| || || || | |||| Sbjct 5633597 TCTCAATTGCGTGAAACAGACGGTTTTTCTC--GGCTGCATCCTTGATGTAGGATTCTAA 5633540 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 ||| | ||| ||||| || ||||| || || || || |||||||||||||| || || Sbjct 5633539 CAAGAGGCTGTACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGC 5633480 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | |||||| || |||||||| || | || | ||||||| |||| || Sbjct 5633479 ACGAGCCTCGGAATTTTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAAT 5633420 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 || ||| |||||| || || || || | | |||| || | ||| ||| | | Sbjct 5633419 ACCATCAGAAGCAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGT 5633360 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 | ||| ||| || | | ||||| || | || || || || ||||||| ||||| Sbjct 5633359 TAGATTTTCCCAGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGA 5633300 Query 13675 AGCAACAGCCTTCTTATACAT 13695 || | |||||||| ||||| Sbjct 5633299 GGCCTCGGCCTTCTTGTACAT 5633279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430963474889406