Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq50 102 7e-17 seq17 98.7 8e-16 seq30 84.2 2e-11 >seq50 Length=4141196 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| ||||||||||| || ||||| || | ||||| Sbjct 1513351 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCA 1513410 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || | || | | |||||| || || | || ||||||||| | Sbjct 1513411 AGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGA 1513470 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | |||||||||| |||| ||| | ||| ||||| ||| Sbjct 1513471 ATCTTGGCCTTCACATTGTCGATGGTATCGGAGCTCTCCACCTCCAATGTGATGGTCTTA 1513530 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| ||||||||||| Sbjct 1513531 CCGGTAAGAGTCTTCACGAAAATCTGCAT 1513559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||||||| |||||||| || || | || ||||||| || ||||| ||| || | Sbjct 1513825 TCCTTTTGGATGTTGTAGTCGGCAAGGGTTCTACCGTCCTCGAGTTGCTTTCCGGCGAAG 1513884 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || ||||||||||| ||| || | || ||||||||| || || ||||| | | Sbjct 1513885 ATCAAACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 1513944 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| ||| ||| | || ||||| || ||||| | || || | Sbjct 1513945 TCG--ATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGA 1514002 Query 48714 CAAAAATCTGCATC 48727 |||||||||||||| Sbjct 1514003 CAAAAATCTGCATC 1514016 >seq17 Length=7869039 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| | ||| || || || || |||||| || ||||||||||||||| Sbjct 3556941 CCACCGCGAAGCCTGAGCACCAAGTGCAGCGTAGACTCCTTCTGTATGTTGTAATCAGCC 3557000 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| ||| | |||| | | ||||||||| || Sbjct 3557001 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAAATGAGCCTCTGCTGATCTGGTGGG 3557060 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || || |||||| ||| ||| ||| | | | |||||||| | ||| | Sbjct 3557061 ATACCCTCTTTGTCCTGAATCTTCGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACC 3557120 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||| || || ||||| ||||| || |||||||| Sbjct 3557121 TCCAGGGTGATGGTTTTCCCAGTTAGAGTCTTCACGAATATCTGCAT 3557167 >seq30 Length=5940761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || || |||||||||| ||| ||| || | ||||| ||||| || ||| | Sbjct 3346193 CTCCTTCTGGATATTGTAATCAG-CAAGTGTCCGACCATCCTCGAGCTGTTTCCCGGCAA 3346251 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | |||| | |||||| || || | | |||||||||| ||||||| ||| | | Sbjct 3346252 AGATTAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATTTTCGCCTTCACAT 3346311 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | ||| || | || |||||||| ||||||||||| || | Sbjct 3346312 TATCAATTGTATCAGAGCTCTCAACTTCAAGGGTAATGGTTTTTCCGGTGAGAGTCTTGA 3346371 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 3346372 CAAAGATCTGCAT 3346384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421232702201603