Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq30 170 3e-38 seq254 163 4e-36 seq1 138 2e-28 seq2 114 2e-21 seq439 86.0 1e-12 >seq30 Length=5940761 Score = 170 bits (188), Expect = 3e-38 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || ||||| |||||||||||||||| ||| Sbjct 716007 GATAACATCCAAGGTATCACCAAGCCTGCCATTCGTCGCTTGGCTCGTCGTGGTGGTGTC 715948 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | ||||||| |||| ||||| |||| | |||||||||||| | Sbjct 715947 AAGCGTATCAGTGGTCTCATCTATGAGGAGACTCGTGGTGTTCTCAAGATCTTCCTCGAA 715888 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| || ||| || || |||||| || ||||| ||||| || Sbjct 715887 AACGTCATTCGTGATGCCGTCACCTACACTGAACACGCTCGCCGGAAGACCGTCACTGCC 715828 Query 16640 ATGGATATCGTCTATGC 16656 ||||| |||||||||| Sbjct 715827 ATGGACGTCGTCTATGC 715811 Score = 167 bits (184), Expect = 4e-37 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || ||||| |||||||||||||||| ||| Sbjct 738081 GATAACATCCAAGGTATCACCAAGCCTGCCATTCGTCGCTTGGCTCGTCGTGGTGGTGTC 738022 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | ||||||| |||| ||||| |||| | |||||||||||| | Sbjct 738021 AAGCGTATCAGTGGTCTCATCTATGAGGAGACTCGTGGTGTTCTCAAGATCTTCCTCGAA 737962 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| || || || || |||||| || ||||| ||||| || Sbjct 737961 AACGTCATTCGTGATGCCGTCACTTACACTGAACACGCTCGCCGGAAGACCGTCACTGCC 737902 Query 16640 ATGGATATCGTCTATGC 16656 ||||| |||||||||| Sbjct 737901 ATGGACGTCGTCTATGC 737885 Score = 152 bits (168), Expect = 8e-33 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||||||||| || || || || ||||||| |||||||| || Sbjct 764562 GATAACATTCAAGGTATCACCAAGCCTGCCATTCGCCGCTTGGCTCGACGTGGTGGTGTG 764503 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | ||||||| |||| ||||| ||| | |||||||||||| || Sbjct 764502 AAGCGTATCAGTGGTCTCATCTATGAGGAGACTCGTGGGGTTCTCAAGATCTTCCTCGAG 764443 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | ||| || ||||||||| || ||||| ||||| || Sbjct 764442 AACGTCATTCGTGATGCCGTAACCTACACTGAGCACGCTCGCCGGAAGACCGTCACTGCC 764383 Query 16640 ATGGATATCGTCTATGC 16656 ||||| |||||||||| Sbjct 764382 ATGGACGTCGTCTATGC 764366 Score = 134 bits (148), Expect = 2e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || ||||| ||||| | |||||||| ||| Sbjct 788930 GATAACATCCAAGGTATCACCAAGCCTGCCATTCGTCGCTTGGCTAGACGTGGTGGTGTC 788871 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||| | |||| || |||| ||||| ||| | ||||| || || | Sbjct 788870 AAGCGTATTAGTGGTCTCATCTACGAGGAGACTCGTGGGGTTCTCAAGATATTTCTTGAA 788811 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | ||| || ||||||||| || ||||| |||||| | Sbjct 788810 AACGTCATTCGTGATGCCGTTACCTACACTGAGCACGCTCGCCGGAAGACCGTCACCGCT 788751 Query 16640 ATGGATATCGTCTATGC 16656 ||||| |||||||||| Sbjct 788750 ATGGACGTCGTCTATGC 788734 >seq254 Length=622110 Score = 163 bits (180), Expect = 4e-36 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | ||| |||||||||| || || ||||||||||| || || Sbjct 306324 CGCAAAGCGTCATCGTAAGGTTCTGAGAGATAACATTCAGGGCATCACCAAGCCGGCCAT 306265 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | |||||||| | ||||||||||| |||||| || ||| ||| ||||||| |||| Sbjct 306264 TAGACGTCTGGCGAGGCGTGGTGGAGTGAAGCGTATCAGTGGTTTGATCTATGAGGAGAC 306205 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||||||||| | ||| ||| |||| || || || ||| || || Sbjct 306204 TCGAGGCGTCCTCAAGATCTTCTTGGAGAACGTCATCCGCGACGCGGTCACCTACACTGA 306145 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| ||| |||||||||||| | |||||| |||||||||| Sbjct 306144 ACACGCTCGACGGAAGACTGTCACCGCTATGGATGTCGTCTATGC 306100 Score = 149 bits (164), Expect = 1e-31 Identities = 195/270 (72%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || | |||||||| ||||||||||| ||||| || || Sbjct 321435 CGCAAAGCGTCACCGTAAGGTGCTGAGGGATAACATTCAAGGAATCACGAAGCCGGCCAT 321376 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | |||||||| | ||||||||||| |||||| || || ||| |||| || |||| Sbjct 321375 TAGGCGTCTGGCCAGGCGTGGTGGAGTTAAGCGTATCAGCGGTTTGATCTACGAGGAGAC 321316 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||||||||||| | | ||| |||| ||| || || |||||| || Sbjct 321315 TCGCGGGGTCCTCAAGATCTTCCTGGAAAACGTCATCCGTGACGCAGTCACCTATACTGA 321256 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| ||| |||||||| ||||||| || | || || || || Sbjct 321255 ACACGCTCGCCGGAAGACTGTGACCGCCATGGATGTCGTCTACGCCCTCAAGCGACAGGG 321196 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 | | | | || || ||||| ||| ||| Sbjct 321195 CAGGACCCTCTACGGCTTTGGTGGTTGATC 321166 Score = 136 bits (150), Expect = 6e-28 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | || | |||||||| || || ||||||||||| || || Sbjct 325018 GCAAAGCGTCATCGTAAGGTGCTGAGGGATAACATTCAGGGTATCACCAAGCCGGCCATT 324959 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | |||||||| | |||||||| || |||||| || ||| ||| |||| || |||| | Sbjct 324958 AGACGTCTGGCGAGGCGTGGTGGTGTGAAGCGTATCAGTGGTTTGATCTACGAGGAGACT 324899 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||||||||| | ||| ||| |||| || || || || || || Sbjct 324898 CGCGGAGTTCTCAAGATCTTCTTGGAGAACGTCATCCGAGACGCAGTCACTTACACTGAA 324839 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| ||| |||||||| ||||||| || | || || || ||| Sbjct 324838 CACGCTCGCCGGAAGACTGTGACCGCCATGGATGTCGTCTACGCTCTCAAGCGACAGGGC 324779 >seq1 Length=14325340 Score = 138 bits (152), Expect = 2e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| ||| | ||||||||||| || ||||||||||| || ||| Sbjct 2861331 GCGAAGAGGCATCGCAAGGTTCTGAGGGATAACATCCAGGGCATCACCAAGCCTGCAATC 2861272 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | |||| | ||||||||||| |||||| | || || ||||||| |||| | Sbjct 2861271 CGAAGGTTGGCGAGGCGTGGTGGAGTTAAGCGTATTAGCGGTCTGATCTATGAGGAGACT 2861212 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| || ||| ||| || | ||||||| || ||||||||| Sbjct 2861211 CGTGGTGTCCTCAAGATCTTTCTTGAGAACGTCATTCGTGATGCTGTCACTTATACCGAG 2861152 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || ||||| ||||| | ||||| | || ||||| Sbjct 2861151 CACGCTCGCCGGAAGACGGTCACTGCTATGGACGTTGTTTATGC 2861108 >seq2 Length=14146038 Score = 114 bits (126), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | | || ||||| ||||||||||| ||||| ||||||||||| || Sbjct 13663607 GCGAAGCGTCATCGTAAGGTC-CTTCGTGATAACATCCAGGGAATTACCAAGCCAGCCAT 13663549 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | ||||| | | || || || |||||| || || || |||| || |||| Sbjct 13663548 CAGAAGGTTGGCTAGAAGAGGAGGTGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGAC 13663489 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | || ||||||||| ||| ||| |||| || ||| | ||| ||||| Sbjct 13663488 CAGAGGAGTTCTCAAAATCTTCCTCGAGAACGTGATCCGCGACGCTGTGACCTACACCGA 13663429 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| ||| |||||||| || || | ||||| | || ||||| Sbjct 13663428 GCATGCTCGTCGTAAGACGGTTACTGCGATGGACGTGGTTTATGC 13663384 Score = 102 bits (112), Expect = 1e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | |||||| |||||||| || || || || |||||||| ||| Sbjct 13688479 GCAAAGCGTCATCGTAAGGTTCTTCGCGATAACATTCAGGGCATTACAAAGCCAGCCATC 13688420 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | || || || |||||| || || || ||||||| |||| Sbjct 13688419 AGGAGGTTGGCCAGAAGAGGAGGTGTGAAGCGTATCAGCGGTCTGATCTATGAGGAGACC 13688360 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | || ||||||||| ||| ||| || | || ||| | ||| |||||| Sbjct 13688359 AGAGGTGTTCTCAAAATCTTCCTCGAGAACGTGATTCGCGACGCTGTAACCTACACCGAG 13688300 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| ||||| || || || | ||||| | || ||||| Sbjct 13688299 CACGCTCGCCGTAAAACGGTTACTGCGATGGACGTGGTTTATGC 13688256 >seq439 Length=111759 Score = 86.0 bits (94), Expect = 1e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||| ||||||||| ||||||||||| | || || || ||||| | | |||||| || Sbjct 30893 GATAGCATCCAAGGTATCACCAAGCCTACCATTCGGCGGTTGGCTTGACATGGTGGTTTC 30834 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 | || | || ||| | ||||||| |||| || || ||| | ||||| |||| | Sbjct 30833 ATGCTTATCAGTGGTCTCATCTATGAGGAGACTCATGGGGTTCTCAAGATAGTCCTTGAA 30774 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | ||| || |||||| | | ||| | |||| || Sbjct 30773 AATGTCATTCGTGATGCCGTTAGCTACACTGAGCACAATCGCCAGAAGGCCGTCATTGCC 30714 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 30713 ATGGATGTCGTCTATGC 30697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071905751879