Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3603 587 2e-163 seq74 156 1e-33 seq199 140 9e-29 >seq3603 Length=163330 Score = 587 bits (650), Expect = 2e-163 Identities = 732/995 (74%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || ||||| || || | Sbjct 1446 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1387 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 1386 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 1327 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1326 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAAT 1267 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| ||||| || | |||| | || || || || ||||||||||||||||| Sbjct 1266 ATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGATC 1207 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| ||||||||||| || ||||| ||| |||| |||| Sbjct 1206 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1148 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | | |||||||| || | | Sbjct 1147 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCG 1088 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | |||| ||| ||| Sbjct 1087 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1028 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | |||||| |||| ||||| || || ||||||||||||||| || | Sbjct 1027 TGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAA 969 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| | Sbjct 968 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 909 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | ||||| ||||| |||||||| || || || ||| ||||||||| | Sbjct 908 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 849 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| ||||| | |||| |||||| ||||| ||| ||| || | | Sbjct 848 GTTCCTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAG 789 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 788 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 729 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 728 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAG 669 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| |||| | | || ||| |||| |||||||||| Sbjct 668 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCA 609 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCA 20186 |||| |||||||| || || ||||| || |||||||| ||||| || |||| Sbjct 608 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAA-GGTCGTGTAATTAAC 550 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 549 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 490 Query 20247 GCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||| |||||||| || || ||||| | | ||| Sbjct 489 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 455 >seq74 Length=3028681 Score = 156 bits (172), Expect = 1e-33 Identities = 243/345 (70%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 19722 TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTT 19781 || ||| |||| ||||| || || ||||||||||||| | || |||| | ||||||| Sbjct 694431 TATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGGATCT-TAGTACTTTC 694489 Query 19782 AACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTC 19841 ||||| ||| | |||||| | || | |||| ||||||||||| || || |||||| | Sbjct 694490 AACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCACCCATTTCACATGTTA 694549 Query 19842 GGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACT 19901 ||||| ||||| ||||| ||| ||||| || ||||||||| | | ||| ||| Sbjct 694550 GGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCATTGTTCCTCGGTAACT 694609 Query 19902 TCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGG 19961 || | |||| |||||| || || || | || | || ||| ||| | Sbjct 694610 TCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAAGGTTATGGATTCAGT 694669 Query 19962 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTT 20021 || |||| || ||||||||||| | | || || || ||||| | |||| || Sbjct 694670 TTAGGGAAAGAAACTTATAATATTGTAACCACCCATGGTTATTTTGGCGAACTGATCTTC 694729 Query 20022 CAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 ||||||||| |||||| ||||||| ||||||||||| |||||| Sbjct 694730 CAATATGCTAGTTTCAACAATTCTCATTCTTTACATT--TTTCTT 694772 >seq199 Length=1013994 Score = 140 bits (154), Expect = 9e-29 Identities = 176/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 20043 TCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCC 20102 ||||||||||||| |||||| || ||| ||| || || || || || ||| |||| | Sbjct 992617 TCTCGTTCTTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCT 992558 Query 20103 ATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTT 20162 | || ||| |||| |||||||||||||| |||||||| | || ||||| || |||||| Sbjct 992557 TTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTT 992498 Query 20163 GA-TGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGG 20221 || ||||| || |||| | ||||||||| | | || | |||||||| || Sbjct 992497 GACAGTCAA-GGTCGTGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGG 992439 Query 20222 ATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 | ||||||||||| || || |||||||| |||||||| | || ||||| | | ||| Sbjct 992438 TATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGA 992379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144435419975868