Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3603 553 3e-152 seq199 159 6e-34 seq74 132 8e-26 >seq3603 Length=163330 Score = 553 bits (612), Expect = 3e-152 Identities = 694/946 (73%), Gaps = 6/946 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| ||||| |||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1406 TTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 1348 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1347 ATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGG 1288 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| ||||| || ||||||||||| || |||| |||| || ||| Sbjct 1287 TCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATC 1228 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| ||||| ||||||||||| ||| | ||||||| ||| | ||||||||| Sbjct 1227 GGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGT 1168 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 1167 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 1108 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 | ||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 1107 GAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1048 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | |||||| | ||||| || ||||| Sbjct 1047 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCT 988 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||||||| | |||||||| || || Sbjct 987 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 928 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 927 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 868 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||||| Sbjct 867 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAA 808 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 807 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 748 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| ||||| || || || || | |||||||| ||||| |||||||| | Sbjct 747 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 688 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||||| || | |||||||| | || | ||||| || || | ||| Sbjct 687 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGT 628 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 ||| |||| ||||| |||||||||||||| ||||| ||||||||||| || ||||| || Sbjct 627 ATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA--CA 570 Query 212449 -TC-AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGG 212506 || |||| || || ||||||| |||| || | ||| | || ||||||||||||| Sbjct 569 GTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGG 510 Query 212507 AAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 509 AAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 464 >seq199 Length=1013994 Score = 159 bits (176), Expect = 6e-34 Identities = 172/227 (76%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 ||||| |||||||| || | |||||||| | || | ||||| || || | ||||| Sbjct 992609 TTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTAT 992550 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | |||| ||||| |||||||||||||| ||| | ||||||||||| || ||||| | Sbjct 992549 CAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGA-----C 992495 Query 212451 AGGTAAGGT--TGTTCCTA---CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 || ||||| ||| || |||||| |||| || | ||| | || |||||||||||| Sbjct 992494 AGTCAAGGTCGTGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATG 992435 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||| ||| | ||||| ||||||||||| | ||| |||| Sbjct 992434 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTTTAGACCTAGC 992388 >seq74 Length=3028681 Score = 132 bits (146), Expect = 8e-26 Identities = 197/278 (71%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 ||| | ||||||| ||||||||| | |||||| |||| || | ||| || ||| Sbjct 694356 CGTCTGGGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACT 694415 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 |||| ||| | | || ||| | ||||| || ||||| || |||||||||||||| Sbjct 694416 ACTGTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGG 694475 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || | || | | |||||||||||| | |||||| | || | | ||||||||||||||| Sbjct 694476 ATCTTAGTA-CTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCAC 694534 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 ||||| || ||| |||||| || ||||| ||| ||| | | || ||||||||| Sbjct 694535 CCATTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCAT 694594 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCAC 212204 |||| || || ||| | ||| | |||||||| Sbjct 694595 TGTTCCTCGGTAACTTCTATTTTAATCAGGGAAACCAC 694632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807518829732680