Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq97 95.1 1e-14 seq8 95.1 1e-14 seq6 91.5 1e-13 seq143 89.7 5e-13 seq50 86.0 6e-12 >seq97 Length=2389559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | |||||||| || | |||||||| | || ||| | || | || | | Sbjct 873729 AATGCAAATTTTTGTAAAGACGCTTACTGGAAAGACCATAACCCTTGAGGTTGAGAGCTC 873670 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | || || || || | |||||| |||||| ||||| || || || || || || | Sbjct 873669 A-GATACGATTGATAATGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACC 873611 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || || || |||| | || || || || || |||| || | | | ||||||| Sbjct 873610 AGCAGAGGCTGATTTTTGCTGGAAAGCAGCTAGAGGATGGCAGGACCTTGGCTGACTATA 873551 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || || |||||| | |||||||| || |||||| ||||||| Sbjct 873550 ACATTCAGAAGGAGTCTACTTTGCATCTGGTTCTTAGACTTCGAGGAGG 873502 >seq8 Length=10307871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| |||| || || | || ||| | || | ||||| Sbjct 8849338 ATGCAGATCTTCGTAAAAACCCTAACCGGGAAGACCATAACCCTTGAGGTTGAATCCTCA 8849397 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| |||||||| || |||||||||||||| Sbjct 8849398 GACACCATCGACAATGTGAAGACGAAGATCCAAGACAAAGAGGGCATACCTCCCGATCAG 8849457 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | || || | || || || || ||||| || | | | | | ||| || || || Sbjct 8849458 CAACGCCTTATCTTCGCGGGAAAGCAGCTCGAGGACGGCCGCACCCT-AGCTGATTACAA 8849516 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || ||||||||| |||| |||| || |||| ||||||||| Sbjct 8849517 TATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGACTCAGAGGAGGA 8849565 >seq6 Length=10738081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| ||||||| ||| | || ||| | || | || || Sbjct 270864 ATGCAGATCTTCGTAAAAACCCTAACTGGGAAAACCATAACCCTAGAGGTTGAGTCCTCA 270805 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| |||||||| || || ||||||||||| Sbjct 270804 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCTCCCGATCAG 270745 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || || || || || || || | ||| | | ||| || || Sbjct 270744 CAACGCCTTATCTTCGCGGGAAAGCAGCTTGAGGACGGCCGAACCCTGGCCGATTACAAT 270685 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || |||||||| || | |||||||| || | || ||||||||| Sbjct 270684 ATCCAGAAAGAATCGACGCTTCATCTGGTTCTTCGTCTCAGAGGAGGA 270637 >seq143 Length=1536321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 384756 GACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 384697 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | || | || ||| || ||||||||||||| |||| | || |||||| ||| Sbjct 384696 CAAAGGTTGATCTTCGCCGGAAAGCAACTCGAAGATGGAAGAACCCTCGCCGACTACAAC 384637 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || ||||| || |||| || || || | || || ||||||| Sbjct 384636 ATCCAGAAGGAATCCACCCTCCACCTTGTGCTTCGTCTCAGGGGAGGAA 384588 >seq50 Length=4141196 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| || || || | |||||| | || | || | Sbjct 1514015 ATGCAGATTTTTGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGAGCTCC 1513956 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 1513955 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 1513896 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || ||| || |||||||| || | ||||| | | |||||| ||| Sbjct 1513895 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGTAGAACCCTTGCCGACTACAAC 1513836 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || |||| || || || | || || ||||| Sbjct 1513835 ATCCAAAAGGAATCCACCCTCCACCTTGTGCTCCGTCTAAGGGGAGG 1513789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478640842242160