Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq34 105 2e-17 seq14 96.9 9e-15 seq257 87.8 5e-12 >seq34 Length=5171523 Score = 105 bits (116), Expect = 2e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || |||||||||||||| |||||||| || Sbjct 2873697 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGTTCTGCTGACATG 2873756 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| || |||||| ||||| ||| || ||| | || ||| | || |||||| Sbjct 2873757 GGTCTTGGTGTGCCATTTAATGTTGCATCTTATGCTCTATTGACGTGCATGATTGCTCAT 2873816 Query 111822 TTT 111824 || Sbjct 2873817 GTT 2873819 >seq14 Length=8593181 Score = 96.9 bits (106), Expect = 9e-15 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 111692 TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATC 111751 |||| | ||| |||||||||| | | ||| | | || || |||||||||||||| || Sbjct 3095214 TCTTTTTTGC-AGTTTTATGTGGTCAATGGGGAGTTATCTTGTCAAATGTATCAGCGCTC 3095272 Query 111752 TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTT 111811 |||||| || ||||||||||| || ||||| |||||| ||| || || || || ||| | Sbjct 3095273 TGCTGACATGGGTCTTGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTAACATGCAT 3095332 Query 111812 AATCGCTCATTTT 111824 || |||||| || Sbjct 3095333 GATTGCTCATGTT 3095345 >seq257 Length=623575 Score = 87.8 bits (96), Expect = 5e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| |||||||| || | ||| || | ||| | Sbjct 424718 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATCGAGGGAATATATGATACCTTGAAGGA 424777 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | || ||| ||| || ||||||||||| || | || ||| |||| || Sbjct 424778 GTGTGCTGTGATCAGCAAATCTGCTGGTGGAATTGGTGTTTCTGTTCATAATATTCGAGC 424837 Query 363726 ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | |||||||||| | || || | |||| | || ||||| | ||||| ||||| | Sbjct 424838 CACTAGCAGTTACATTTGTGGTACAAATGGGACA-TCCAATGGTATTGTTCCAATGCTGC 424896 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| || | | ||||| | || || || ||||| ||||| ||| | || || Sbjct 424897 GTGTCTTCAATGACACTGCTCGCTATGTTGATCAGGGAGGAGGCAAGAGGAAGGG 424951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303293432717546