Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq50 95.1 1e-14 seq97 91.5 1e-13 seq8 91.5 1e-13 seq22 87.8 2e-12 seq143 86.0 5e-12 seq65 82.4 7e-11 >seq6 Length=10738081 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| ||||||| ||| | || ||| | || || ||| || Sbjct 270864 ATGCAGATCTTCGTAAAAACCCTAACTGGGAAAACCATAACCCTAGAGGTTGAGTCCTCA 270805 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| |||||||| ||||| ||||||||||| Sbjct 270804 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCTCCCGATCAG 270745 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || ||||| || || || | | ||| | | |||||| || Sbjct 270744 CAACGCCTTATCTTCGCGGGAAAGCAGCTTGAGGACGGCCGAACCCTGGCCGATTACAAT 270685 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || |||||||| || ||||| | || | | | ||||||||| Sbjct 270684 ATCCAGAAAGAATCGACGCTTCATCTGGTTCTTCGTCTCAGAGGAGGA 270637 >seq50 Length=4141196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || || | || ||| | || |||||| | | Sbjct 1514015 ATGCAGATTTTTGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGAGCTCC 1513956 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 1513955 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 1513896 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||||||||| || | |||| | | ||| || ||| Sbjct 1513895 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGTAGAACCCTTGCCGACTACAAC 1513836 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 1513835 ATCCAAAAGGAATCCAC 1513819 >seq97 Length=2389559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || | |||||||| | || ||| | || || ||| | Sbjct 873729 AATGCAAATTTTTGTAAAGACGCTTACTGGAAAGACCATAACCCTTGAGGTTGAGAGCTC 873670 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | |||||| |||||| ||||| || || || || || || || Sbjct 873669 AGATACGATTGATAATGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 873610 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| | || ||||| || || |||| ||| | | | || ||||| Sbjct 873609 GCAGAGGCTGATTTTTGCTGGAAAGCAGCTAGAGGATGGCAGGACCTTGGCTGACTATAA 873550 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || || ||||| | ||| | || | ||| | ||||||| Sbjct 873549 CATTCAGAAGGAGTCTACTTTGCATCTGGTTCTTAGACTTCGAGGAGG 873502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || ||||| | || || ||||||| ||| Sbjct 873956 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCT 873897 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || || ||||| || || || || || || || Sbjct 873896 GATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 873837 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| |||| | | || |||||||| ||||||| | | | | | || ||||| || Sbjct 873836 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGA-CTTTGGCTGATTACAA 873778 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||||||||||| | || |||| | | |||||||| ||| Sbjct 873777 CATTCAAAAAGAATCTACACTCCACCTAGTTCTTCGGTTGAGAGGGGGA 873729 >seq8 Length=10307871 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| |||| || || | || ||| | || || || || Sbjct 8849338 ATGCAGATCTTCGTAAAAACCCTAACCGGGAAGACCATAACCCTTGAGGTTGAATCCTCA 8849397 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| |||||||| ||||||||||||||||| Sbjct 8849398 GACACCATCGACAATGTGAAGACGAAGATCCAAGACAAAGAGGGCATACCTCCCGATCAG 8849457 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | || || | || || ||||| ||||| || | | | | | | ||| ||||| || Sbjct 8849458 CAACGCCTTATCTTCGCGGGAAAGCAGCTCGAGGACGGCCGCACCCT-AGCTGATTACAA 8849516 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || |||||||| | || || || | || | ||||||||| Sbjct 8849517 TATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGACTCAGAGGAGGA 8849565 >seq22 Length=7127660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| ||||||| || ||||||| | ||||| ||| | Sbjct 3801808 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATTACTTTGGAAGTGGAGAGCTCT 3801867 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || ||||| ||||| || || ||||| || |||||| Sbjct 3801868 GATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCAA 3801927 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||| || || |||| || | | | ||| ||||| || Sbjct 3801928 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACCCT-AGCTGATTACAA 3801986 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || ||||| |||| || || Sbjct 3801987 TATCCAGAAGGAGTCTACTCTTCACTTGGT 3802016 >seq143 Length=1536321 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || || | || |||||| | Sbjct 384816 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAGGTCGAGAGCTCG 384757 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 384756 GACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 384697 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| |||||||||||||||| |||| | || ||| || ||| Sbjct 384696 CAAAGGTTGATCTTCGCCGGAAAGCAACTCGAAGATGGAAGAACCCTCGCCGACTACAAC 384637 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 384636 ATCCAGAAGGAATCCAC 384620 >seq65 Length=3230173 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||| || ||| | ||||| | || || ||| Sbjct 2676799 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACTYTGGAGGTTGAGAGTTC 2676740 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 2676739 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 2676680 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | || |||||||| ||||||| || | | || || || Sbjct 2676679 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGAYTAYAA 2676620 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| || ||||| || Sbjct 2676619 CATTCAGAAGGAATCCAC 2676602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429917120838465