Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq97 105 6e-18 seq30 86.0 5e-12 >seq97 Length=2389559 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || ||||| || ||||| ||||| ||| | || ||| | Sbjct 873729 AATGCAAATTTTTGTAAAGACGCTTACTGGAAAGACCATAACCCTTGAGGTTGAGAGCTC 873670 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || ||| ||| || || || || || | ||| || || Sbjct 873669 AGATACGATTGATAATGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 873610 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| || || || |||| |||| || ||| |||| || ||||| Sbjct 873609 GCAGAGGCTGATTTTTGCTGGAAAGCAGCTAGAGGATGGCAGGACCTTGGCTGACTATAA 873550 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||||||| | ||| |||| | ||| | |||||||| Sbjct 873549 CATTCAGAAGGAGTCTACTTTGCATCTGGTTCTTAGACTTCGAGGAGG 873502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| ||||| || || || ||||| |||| Sbjct 873956 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCT 873897 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| ||||| || || || || ||||| || ||| Sbjct 873896 GATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 873837 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | || | ||| || || ||| | ||||||| | || |||| ||||| ||| Sbjct 873836 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAAC 873777 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||||||||| ||||| Sbjct 873776 ATTCAAAAAGAATCTAC 873760 >seq30 Length=5940761 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||||||||| || ||||| ||||| || || || | ||| ||| | Sbjct 3346613 AATGCAAATTTTTGTCAAGACTCTCACCGGAAAGACAATCACTCTTGAAGTTGAGAGCTC 3346554 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| | | ||||| || || ||| ||| || || || ||| | ||| || | Sbjct 3346553 CGACAC-GATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCAGACC 3346495 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||| | |||| ||| || || || | || |||| | ||| |||| ||||| | Sbjct 3346494 AACAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACCCTGGCAGATTACA 3346435 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| || || |||||||| Sbjct 3346434 ACATCCAGAAGGAGTCTAC 3346416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425325322480360