Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 188 9e-43 seq8 150 2e-31 seq257 118 1e-21 seq27 118 1e-21 >seq6 Length=10738081 Score = 188 bits (208), Expect = 9e-43 Identities = 403/598 (67%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| | ||||||||||| || || ||||| ||||| || | Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| | || || || || | ||| ||||| | |||||| | | ||||| ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCG-CGCAAAAGCTGCCAGAGAAGAA 5633702 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATG 32836 || || || || || ||||| | || | || | || | | ||| | Sbjct 5633701 TATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTA-- 5633644 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | | ||| | || ||||||| || ||||| || ||||| || || | Sbjct 5633643 -ATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTG 5633585 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||| ||| |||||| || ||| || | || | || | ||| || || ||||| Sbjct 5633584 AAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACAT 5633525 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 |||||||| ||||| || || || ||||| || ||||||||| | |||||||| | | Sbjct 5633524 CTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATT 5633465 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 || |||||| | || || || | ||||| | || || || ||| || || Sbjct 5633464 TTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGC 5633405 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33136 || || || | ||| | | || || | ||| ||| | | ||||| || | ||| || Sbjct 5633404 GAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGTC 5633345 Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196 | | ||||| || | || |||||||| | ||||| || || ||||| ||||| || Sbjct 5633344 ACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 5633285 Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 ||||| | |||||| ||| | ||||||||||| || ||| ||||||| ||||||| Sbjct 5633284 GTACATTTCCCAGATTTCAGGGTATTGAATTGGGAACATACAGAATCTATCTGGATTT 5633227 >seq8 Length=10307871 Score = 150 bits (166), Expect = 2e-31 Identities = 568/878 (65%), Gaps = 20/878 (2%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| |||||||| || || | ||| ||||| ||||| ||||| || | || || || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| ||| || || || ||| | ||||||| || | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| | ||| || || || || ||||| |||||| ||||| ||||| || | | Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 32549 TTTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 | || | || | | | || | ||| | | | | | || || ||||| | | | Sbjct 4255996 CGCACACGGCAATGCGTCGCAC-ACGAACTCCCTCT-CGATGTCCACTGCGTCGGCAACA 4256053 Query 32607 ATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTAAACATCAAACAT 32663 || | ||| || |||||| || | | || || | | | | || ||| Sbjct 4256054 ATTCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGT---AGAGCAGACAC 4256110 Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 ||||||||||||||||| ||||||||||| || || ||||| || || || | || Sbjct 4256111 GCGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCC 4256170 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAAT 32782 ||||| ||||| ||||| || | ||| ||||| | | || | | | || || ||||| || Sbjct 4256171 GGCATCAGGCCGCGCTTCTTCAACCAGAATATCG-CACAGAAGCTGCCGGAGAAGAATAT 4256229 Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTAT 32839 || || || || || || || || | ||| | | ||| | ||| || Sbjct 4256230 CCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGTCG---AT 4256286 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| | | ||||| ||||| || || || || || | ||||| || || || Sbjct 4256287 CCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAA 4256346 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 || | | || || ||| || | |||| || | ||| || || ||||| || Sbjct 4256347 CAGGCGGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTC 4256406 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCT 33018 || || ||||| ||||| || ||||| || ||||| || ||| | ||||||| || | Sbjct 4256407 GGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCA-CGGGCCTCGGAGATTT 4256465 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | ||||| | || || | || | ||||| || || |||||| || || | Sbjct 4256466 GGACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGA 4256525 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33138 | || |||| |||||| | || || | ||| ||||| | ||||| | | ||| | | Sbjct 4256526 AGAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGAC 4256585 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 || ||||| || | ||| |||||||| | ||||| || || || || || || || | Sbjct 4256586 GGAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGT 4256645 Query 33199 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 |||| | ||| || | ||||||||||||| || ||| Sbjct 4256646 ACATTTCCCATATTTGGGGATATTGAATTGGGAACATA 4256683 >seq257 Length=623575 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||||||||| | || | ||| |||| ||| | || | || |||||||| |||||| Sbjct 424937 TCCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACC 424878 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || || | || || || | | |||| ||||||||| || || Sbjct 424877 ATTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGA 424818 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 424817 AACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||| ||||||||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 >seq27 Length=6178458 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || |||| |||| | || | || |||||| | |||||| Sbjct 1665526 TCCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACC 1665467 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || || |||||||| | | |||||||||||||| || || Sbjct 1665466 ATTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGA 1665407 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || ||| || || |||||||| || Sbjct 1665406 AACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATAT 1665347 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 1665346 TCCTTCAATACTATCATCTTTCATG 1665322 Score = 100 bits (110), Expect = 4e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCCGG 63039 |||||||||| ||| ||||| || |||||| || | | ||| |||||| |||| || Sbjct 1666014 GTATACAATCTTTCAAACTCCTCGCCCCAA-CAGTCTGACAGCCCAGGAGCCTCATTGGG 1665956 Query 63040 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63099 || | ||| ||||| | || ||| | |||| || |||||||||||| |||||||| Sbjct 1665955 GCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAAGAGATCGGGAATCCA 1665896 Query 63100 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 |||||| ||||||||| || | || |||||| || | || || Sbjct 1665895 AAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633603462798800