Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 212 7e-50 seq8 208 8e-49 seq27 91.5 2e-13 seq9 89.7 6e-13 seq144 87.8 2e-12 seq114 87.8 2e-12 seq143 86.0 7e-12 seq7 86.0 7e-12 seq5 84.2 2e-11 seq149 82.4 9e-11 seq54 82.4 9e-11 seq47 82.4 9e-11 >seq6 Length=10738081 Score = 212 bits (234), Expect = 7e-50 Identities = 582/876 (66%), Gaps = 17/876 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || ||||| ||| ||||||||||| ||||| |||| ||||| ||| | Sbjct 5634112 TTTCTGATAGTCGCCAACCCGTTTCTCAAAGAAATTGGTCTTCCCTTGTAAAGAAATCAA 5634053 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTAC 92917 | || | | | || |||| | || || || |||| | ||| || | | | Sbjct 5634052 CTCCATCCAATCAAAAGGGTTCTGAACATTGTA-TATCTTTC-CGTATCCCAAGGC-TCC 5633996 Query 92918 AAT-AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || || ||||| || || || || ||||||||| ||||| |||| |||||||| | Sbjct 5633995 AAGCAACCTATCGGCCACGAACTCGATGTACTGACTCATCAGATCAGCGTTCATTCCCAC 5633936 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| ||| |||| |||||| | ||| || |||||||| | || ||||| | Sbjct 5633935 TA-ACGCACATGGTAATGCGTCGCATACGAACTCCCTCTCGATTTCCACCGCTTCCGCAA 5633877 Query 93036 AGATTTCTATTACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCAC 93094 |||| || | |||| || || | | || || | | | | ||| | | ||| Sbjct 5633876 CGATTCCTTTCACTCG-CTCTTCACTCAGCTTCTGCTTCAAAAACTCGTATAGCAGGCAA 5633818 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || ||| || || || ||||||| |||||||||||| || |||||||| || Sbjct 5633817 GCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAACCCC 5633758 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTAT 93213 || | || || |||||||| | ||| ||||| | |||||| || ||||| || ||||| Sbjct 5633757 GGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCCAGAGAAGAATAT 5633699 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 || || ||| || || || || | ||||||||| ||| | | ||| ||| | || Sbjct 5633698 CCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAA---CTGGTAAT 5633642 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | | ||| | ||||| || | | ||||| | || || || |||| ||| Sbjct 5633641 CCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTGAAA 5633582 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | | |||| | | ||| ||||| | || | || || ||||| || Sbjct 5633581 CAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACATCTC 5633522 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 ||||||| ||||| ||||| |||||||| |||||||| | ||| || | | || Sbjct 5633521 CGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATTTTG 5633462 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||||||| || | | || ||||| | || |||||||| || || || || Sbjct 5633461 AACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGCGAA 5633402 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 || || | | | | | || || |||||||| | | | || || ||||| || Sbjct 5633401 GAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGTCACG 5633342 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 |||||||| || || || ||||||||| | ||||| || || || || || || ||||| Sbjct 5633341 TAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTA 5633282 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||| ||||| || || | ||||||||||| || || Sbjct 5633281 CATTTCCCAGATTTCAGGGTATTGAATTGGGAACAT 5633246 >seq8 Length=10307871 Score = 208 bits (230), Expect = 8e-49 Identities = 588/885 (66%), Gaps = 20/885 (2%) Strand=Plus/Plus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| |||||||| ||||| |||| || |||||||| || || || | ||| || ||| Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | | ||||||| |||| || |||| || ||| | | Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 || | ||| || || || || || ||||| ||||| |||||| ||||| || | | Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCA- 4255994 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 ||| ||| || | |||||| || ||| || ||||||| | || || || ||| | Sbjct 4255995 ACGCACACGGCAATGCGTCGCACACGAACTCCCTCTCGATGTCCACTGCGTCGG-CAACA 4256053 Query 93039 TTTCTATT-ACTCTACTATTTGGTG-GTTTTTGTA-CGACATAATTGTACATTAAGCACG 93095 ||| || |||| || | | |||| || | ||| | | ||| | | |||| Sbjct 4256054 ATTCCCTTGACTCG-CTCCTCACTCAGTTTCTGCCTCAACA-ACTCGTAGAGCAGACACG 4256111 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 | || ||| |||| || ||||||| || |||||||| || ||| ||||| || | Sbjct 4256112 CGAAATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCG 4256171 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||| || || ||||| | ||| ||||| | | || || || || || ||||| | Sbjct 4256172 GCATCAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCC 4256231 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 | || ||| || ||||| | | || || || || | ||||| | | ||||| Sbjct 4256232 CCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAA---CCGTCGATCC 4256288 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 ||| | ||||| |||||||||||| | || || | || ||||| ||| || | Sbjct 4256289 ATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAACA 4256348 Query 93336 GGTAATCTCG-CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || ||| |||| ||||||| ||||||| || | || || ||||| || Sbjct 4256349 GGCGG-CTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTCG 4256407 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || |||| ||||| || || |||||||| ||||| || | || || | ||| || Sbjct 4256408 GAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTGG 4256467 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||| | || | | |||| ||||| || ||||| || || || || || Sbjct 4256468 ACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAAG 4256527 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGG 93572 || |||| || ||| | || || |||||||| |||| | || | ||||| | ||| Sbjct 4256528 AAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACGG 4256587 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | |||||| || ||||| ||||||||| ||||||| || || ||||| ||||| |||| Sbjct 4256588 A--GATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGT 4256645 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| |||||||| | ||||||||||||| || || ||| ||| Sbjct 4256646 ACATTTCCCATATTTGGGGATATTGAATTGGGAACAT-ACAGAAC 4256689 >seq27 Length=6178458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 513162 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAGG 513219 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 ||||||||| || ||||| ||||||| ||||| ||| Sbjct 513220 CGTGGGTTCAAAACCCACTTCTGACAATTTATTTTTG 513256 >seq9 Length=10250128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 7/108 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 || ||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 4482988 GTAAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 4483045 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||||| || ||||| |||||||| | ||| ||| ||||| || Sbjct 4483046 CGTGGGTTCTAATCCCACTTCTGACAAAAT-TTAATGGGGTTTTTTTT 4483092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 4542304 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGA 4542247 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 4542246 GGGCGTGGGTTCAAATCCCACTTCTGACAA 4542217 >seq144 Length=1517418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318 || || ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| Sbjct 1506137 ATGTAGAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGA 1506194 Query 126319 GA----GCGTGGGTTCGAACCCCACACCTGACA 126347 || |||||||||| || ||||| |||||| Sbjct 1506195 GAGAGGGCGTGGGTTCAAATCCCACTTCTGACA 1506227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321 ||| | ||| |||||||||||||||||||||||||||||| | |||||| || | | Sbjct 292711 TACTGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 292654 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || |||||| ||| || ||| Sbjct 292653 CGTGGGTTCAAATCCCACAGCTGTCACATT 292624 >seq114 Length=2026719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1752561 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGGG 1752504 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||| || ||||| |||||||| Sbjct 1752503 CGTGGGTTCAAATCCCACTTCTGACAAA 1752476 >seq143 Length=1536321 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||| ||||||||||||||||||| | |||||| | | ||| | ||||| Sbjct 200476 CAGTTTGGCCGAGTCGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGATAGGGCGTGTGGG 200535 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 200536 TTCAAATCCCACAGCTGTCAAA 200557 >seq7 Length=10603630 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1509106 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGGG 1509163 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 1509164 CGTGGGTTCAAATCCCACTTCTGACAA 1509190 >seq5 Length=10760127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 4588884 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 4588827 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || |||||| ||| || Sbjct 4588826 GTGGGTTCAAATCCCACAGCTGTCA 4588802 >seq149 Length=1481862 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126256 TCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT 126315 |||||| || |||||| ||||||||||||||||||||||||| | ||| |||||| | | Sbjct 183568 TCTATTAAC-GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTT 183624 Query 126316 CGGGA----GCGTGGGTTCGAACCCCACACCTGACAA 126348 || | |||||||||| || ||||| ||||||| Sbjct 183625 CGAAAGAAGGCGTGGGTTCAAATCCCACTTCTGACAA 183661 >seq54 Length=3994441 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 3320858 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAG 3320801 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 3320800 GCGTGGGTTCAAATCCCACTTCTGACA 3320774 >seq47 Length=4346018 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 8/96 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 392724 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAGG 392667 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||| |||||| || Sbjct 392666 CGTGGGTTCAAATCCCACTTCTGAC--ATTATTCTT 392633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556835720381720