Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq97 102 7e-17 seq37 84.2 2e-11 >seq97 Length=2389559 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGA--AACGGAACCCA 111244 ||||| ||||||||||| || |||| || || || ||||| |||| | || | || Sbjct 873272 ATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACAATTACTCTGGAGGTAGAGAGCTCA 873213 Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 ||| | ||| | || || ||| ||| ||||| || || |||| |||| Sbjct 873212 --GATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGATC 873155 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 | || ||||| |||| ||| || || || ||||||||| ||| |||||||||| | Sbjct 873154 AGCAGAGGCTCATTTTTGCTGGGAAGCAGTTGGAAGATGGACGCACTTTGGCCGATTACA 873095 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | ||||| || ||||||||| | ||||| ||| | ||||| || ||||| Sbjct 873094 ACATACAGAAGGAATCTACATTGCATTTGGTGCTTCGTCTACGTGGTGG 873046 >seq37 Length=4974474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 || || |||||||||||||| |||| || ||||||||||| | ||| ||| Sbjct 2662939 ATTCAGATTTTTGTCAAAACACTGACTGGGAAAACCATTACTTTAGAAGTGGAGAGTTCT 2662880 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || | | | | |||||| ||| || || || || || |||| || || Sbjct 2662879 GATACTATAGACAATGTAAAAGCAAAGATCCAGGATAAGGAGGGAATTCCTTCTGACCAG 2662820 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||| || | ||| || || || | |||||| | ||| |||| ||||| ||| Sbjct 2662819 CAGCGGCTCATCTTTGCTGGGAAGCAGCTAGAAGATGGAAGAACACTGGCTGATTACAAT 2662760 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || |||||||| || || || || || | ||||| || ||||||| Sbjct 2662759 ATTCAGAAAGAATCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGCA 2662711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423021423652600