Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq22 98.7 7e-16 seq65 95.1 9e-15 seq37 95.1 9e-15 seq31 89.7 4e-13 seq97 87.8 1e-12 >seq22 Length=7127660 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||| |||| || || || ||||| ||||| ||| | | Sbjct 3801808 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATTACTTTGGAAGTGGAGAGCTCT 3801867 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || || || ||||| |||| | | ||| Sbjct 3801868 GATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCAA 3801927 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || || || || || ||| || || | || ||||||||| Sbjct 3801928 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACCCTAGCTGATTACAAT 3801987 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||||||||| |||| | ||| | || || || Sbjct 3801988 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGTGG 3802034 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| |||| || | || || |||||||| || | ||| ||| | | Sbjct 3801580 ATGCAGATATTTGTTAAGACCCTTACTGGGAAAACCATCACACTTGAAGTAGAAAGCTCG 3801639 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || ||||| || ||| ||||| ||||| | ||||| || Sbjct 3801640 GACACCATTGACAATGTTAAGGCTAAGATTCAGGATAAGGAGGGCATCCCACCTG---AC 3801696 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||| || || |||||||| ||||| || || ||| || |||| |||||| Sbjct 3801697 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGTCGTACCTTGGCTGATTAC 3801756 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || |||||||||||||| || || || Sbjct 3801757 AACATTCAGAAGGAATCCACCCTCCA 3801782 >seq65 Length=3230173 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||| |||| || || || |||| ||||| ||| | | Sbjct 2676342 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACTGTTACTTTGGAAGTGGAGAGCTCT 2676283 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || || ||||| |||| | | ||| Sbjct 2676282 GATACTATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCAA 2676223 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || || || ||||| ||| || || | || ||||||||| Sbjct 2676222 CAGAGGCTTATCTTTGCAGGGAAGCAGCTAGAGGATGGAAGGACCCTAGCTGATTACAAT 2676163 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||||||||| |||| | ||| | || || || Sbjct 2676162 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGYGG 2676116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | || || | || || |||||||| || | ||| ||| | Sbjct 2676571 AATGCAGATATTTGTCAAGACCCTTACTGGGAAAACCATCACACTTGAAGTAGAAAGTTC 2676512 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 ||| || | | | || ||||| || ||| ||||| ||||| | ||||| | Sbjct 2676511 AGACACCATTGACAATGTTAAGGCTAAGATTCAGGATAAGGAGGGCATCCCACCTG---A 2676455 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| || || |||||||| ||||| || || ||| || |||||||||| Sbjct 2676454 CCAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGTCGTACCTTGGCCGATTA 2676395 Query 22010 CAATATTCAGAAGGAATCTACTCTTCA 22036 ||| |||||||||||||| || || || Sbjct 2676394 CAACATTCAGAAGGAATCCACCCTCCA 2676368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || |||| || ||||||||||| |||| || | Sbjct 2676799 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACTYTGGAGGTTGAGAGTTC 2676740 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || || || || || || | ||| | || Sbjct 2676739 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 2676680 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||||||||||||||| || ||||| |||||| | || |||| || || || Sbjct 2676679 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGAYTAYAA 2676620 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||| ||||| || Sbjct 2676619 CATTCAGAAGGAATCCACTCTCCA 2676596 >seq37 Length=4974474 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 || || || ||| | |||||| | || || ||||||||||| | ||| ||| | Sbjct 2662939 ATTCAGATTTTTGTCAAAACACTGACTGGGAAAACCATTACTTTAGAAGTGGAGAGTTCT 2662880 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| || ||||| ||||| | ||| |||| Sbjct 2662879 GATACTATAGACAATGTAAAAGCAAAGATCCAGGATAAGGAGGGAATTCCTTCTGACCAG 2662820 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||||||||| || || ||||||||| || ||| |||| ||||||||| Sbjct 2662819 CAGCGGCTCATCTTTGCTGGGAAGCAGCTAGAAGATGGAAGAACACTGGCTGATTACAAT 2662760 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| || || || |||| | ||| | || || || Sbjct 2662759 ATTCAGAAAGAATCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGG 2662713 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || || || ||||| || |||| ||| | | Sbjct 2663620 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTTGAAAGCTCT 2663561 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||| |||||||| || | || | | ||| Sbjct 2663560 GACACTATTGACAATGTCAAGGCCAAAATCCAAGATAAAGAAGGAATCCCCCTGA-CCAG 2663502 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| ||||| || |||||||| ||| ||| |||| || |||| | Sbjct 2663501 CAGAGACTTATCTTCGCTGGTAAGCAACTAGAGGATGGTCGAACCTTGGCAGACTACATT 2663442 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || | ||| |||| | ||||| |||| ||| Sbjct 2663441 ATTCAGAAGGAATCCACATTGCATCTGGTTCTTCGTTTGAGAGGTGGA 2663394 >seq31 Length=5807843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| |||| || | || || |||||||| || ||| ||| | | Sbjct 4127749 ATGCAGATATTTGTTAAGACCCTTACTGGGAAAACCATCACACATGAAGTAGAAAGCTCG 4127808 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || ||||| || ||| ||||| ||||| | ||||| || Sbjct 4127809 GACACCATTGACAATGTTAAGGCTAACATTCAGGATAAGGAGGGCATCCCACCTG---AC 4127865 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||| || || |||||||| ||||| || || ||| || ||||||||||| Sbjct 4127866 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGTCGTACCTTGGCCGATTAC 4127925 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || |||||||||||||| || || || Sbjct 4127926 AACATTCAGAAGGAATCCACCCTCCA 4127951 >seq97 Length=2389559 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || ||||| || || ||||| |||| || | || Sbjct 873272 ATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACAATTACTCTGGAGGTAGAGAGCTCA 873213 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| ||| ||| || || |||||| | ||||| | Sbjct 873212 GATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTG---AT 873156 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || || |||||||| || || | |||||| | ||| ||||||||||| Sbjct 873155 CAGCAGAGGCTCATTTTTGCTGGGAAGCAGTTGGAAGATGGACGCACTTTGGCCGATTAC 873096 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||||||||| | ||| |||| | ||| |||| || || Sbjct 873095 AACATACAGAAGGAATCTACATTGCATTTGGTGCTTCGTCTACGTGGTGG 873046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || ||||| || || || | || ||| | | Sbjct 873044 ATGCAGATTTTTGTGAAGACATTGACAGGCAAGACTATCACACTTGAGGTGGAGAGCTCT 872985 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| || ||||||||| | ||| ||||| Sbjct 872984 GATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCGGACCAA 872925 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||| |||||||| || ||||| || ||| || |||| || |||||| Sbjct 872924 CAAAGGCTTATTTTTGCTGGGAAGCAACTTGAGGATGGTCGCACCCTGGCGGACTACAAT 872865 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || ||||||||||| ||||||||| Sbjct 872864 ATCCAGAAGGAATCAACTCTTCAT 872841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358109074180462