Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 190 4e-43 seq6 159 7e-34 >seq8 Length=10307871 Score = 190 bits (210), Expect = 4e-43 Identities = 488/730 (67%), Gaps = 16/730 (2%) Strand=Plus/Minus Query 42421 TACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCA 42480 |||||||||||||||| || |||||||| || || || ||||| || | |||||| Sbjct 4256537 TACTGGCCTTCTTCGCTGCTTCTGACGGTATTGTTCTCGAAAACCTCGCTGCTCGGTTCA 4256478 Query 42481 TGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAG 42539 |||| || || || || ||||| || ||| || ||||| ||||| || || || ||| Sbjct 4256477 TGAAGGAAGTCCAAATCTCCGAGGCCCG-TGCATTTTACGGTTTCCAAATCGCTATTGAG 4256419 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 ||| | ||||| ||| ||||| | || | | | |||||| |||| | | |||| Sbjct 4256418 AACATCCACTCCGAGATGTACAGCCTCTTGTTGGAATCATACATCAAGGATTCGGCCGAG 4256359 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | | | |||||| || || ||||| | |||||| | ||| || || || ||| Sbjct 4256358 AAGAGCCGCCTGTTCCGCGCAATCGAGACCGTCCCCTGCGTGGCGAAAAAAGCCGAGTGG 4256299 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || ||| | |||||||| || |||| | | |||| ||| | ||| | || || || Sbjct 4256298 GCCCTCCAATGGATCGACGGTTCCGA---ATCCTTCGCGGAGCGCCTGATCGCATTCGCC 4256242 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 ||||||||| || |||||||| ||| |||| | || |||||| | ||| || Sbjct 4256241 TGCGTCGAGGGGATATTCTTCTCCGGCAGCTTCTGTGCGATATTCTGGTTGAAGAAGCGC 4256182 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | |||||| || | || ||||| ||||| | ||| || ||||||||||| || Sbjct 4256181 GGCCTGATGCCGGGCTTAACTTTCTCAAACGAGTTGATCTCGAGAGACGAGGGGCTACAC 4256122 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | || || || || || || | |||| | ||||| || | ||||||| Sbjct 4256121 TGCGATTTCGCGTGTCTGCTCT--ACGAG-TTGTTGAGGCAGAAACTGAGTGAGGAGCGA 4256065 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC-T 42958 ||| || || | | || || ||||| ||||||| ||||||| | || | ||| | Sbjct 4256064 GTCAAGGGAATTGTTGCCGACGCAGTGGACATCGAGAGGGAGTTCGT-GTGC-GACGCAT 4256007 Query 42959 GCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 |||||| | |||| || |||||| || || ||| || |||| ||| ||| ||| | Sbjct 4256006 TGCCGTGTGCGTTGGTGGGGATGAACTGTGATCTGATGAGCCAGTATATCGAGTTCGTGG 4255947 Query 43018 CCGACCATCTCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTT 43075 |||| | | | || ||||| |||| | |||||||| | | || || Sbjct 4255946 CCGATCGTTTGCTCGGTGCC--TTGGGATATGGAAAGATCTACAACGTTCAGAATCCGTT 4255889 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 || | |||||| ||||||||| |||| || ||||| || |||||||| | || | Sbjct 4255888 TGATTGGATGGAGCTGATCTCGTTGCAGGGGAAAACCAATTTCTTCGAGAAAAGGGTTGG 4255829 Query 43136 CGACTACCAG 43145 || |||||| Sbjct 4255828 AGAATACCAG 4255819 >seq6 Length=10738081 Score = 159 bits (176), Expect = 7e-34 Identities = 479/729 (66%), Gaps = 14/729 (2%) Strand=Plus/Plus Query 42297 GACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGAC 42356 || |||||| |||||||||||||| || ||| |||||||||||| || ||||| Sbjct 5633267 GAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTTGAC 5633326 Query 42357 CTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 || || | || ||| | |||||| || || | ||| || ||| | | Sbjct 5633327 CTCTCCCAAGATCTACGT--GACTGGGAAAATCTAACTCACGGCGAGAAACACTTCATTA 5633384 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 | || ||||||||||| || ||||| || || || | || ||||||||| | Sbjct 5633385 CTCTTGTTCTCGCCTTCTTCGCTGCTTCTGATGGTATTGTTATCGAAAACCTGGCCTCTC 5633444 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | ||||||||||| || || | | ||||| || ||||||||| ||||| ||||| | Sbjct 5633445 GTTTCATGAAAGAAGTTCAAAATTCCGAGGCTCGTGCCTTCTACGGTTTCCAAATAGCAA 5633504 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | |||||| | || || ||| ||||| | || | | | |||||| |||| | | Sbjct 5633505 TCGAGAACATCCATTCGGAGATGTACAGCCTCTTGTTAGAATCCTACATCAAGGATGCAG 5633564 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 |||| ||| | ||||| | || || ||||| || || ||| | | ||||| || Sbjct 5633565 CCGAGAAAAACCGTCTGTTTCACGCAATTGAGACTATCCCTTGCGTGGAAAAGAAAGCTC 5633624 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | ||| | || ||||| ||| | || | | |||| ||| | || || |||| Sbjct 5633625 AGTGGACACTTCGTTGGATTACCAGTTCGGA---ATCTTTCGCCGAACGTCTAGTCGCCT 5633681 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | || ||||||||| || |||||||| ||| ||| | | || |||||| | ||| Sbjct 5633682 TCGCCTGCGTCGAGGGGATATTCTTCTCTGGCAGCTTTTGCGCGATATTCTGGTTGAAGA 5633741 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | | || |||||| || | || || || ||||| | || || ||||||||| Sbjct 5633742 AACGCGGGTTGATGCCGGGGTTAACATTTTCAAACGAGTTGATATCAAGAGACGAGGGGT 5633801 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | || || || ||||| || | |||| | | ||| |||| | | Sbjct 5633802 TGCACTGCGATTTCGCTTGCCTGCTAT--ACGAG-TTTTTGAAGCAGAAGCTGAGTGAAG 5633858 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 |||| || | ||| | |||| || ||||| ||||||| ||||||| | | || | Sbjct 5633859 AGCGAGTGAAAGGAATCGTTGCGGAAGCGGTGGAAATCGAGAGGGAGTTCGT-ATGC-GA 5633916 Query 42955 CGC-TGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTA 43012 ||| | || ||| | | || || |||||| || || ||| | |||||||| ||| Sbjct 5633917 CGCATTACCATGTGCGTTAGTGGGAATGAACGCTGATCTGATGAGTCAGTACATCGAGTT 5633976 Query 43013 CGTCGCCGA 43021 ||| ||||| Sbjct 5633977 CGTGGCCGA 5633985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944296669323280