Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17 100 2e-16 seq143 91.5 1e-13 seq65 91.5 1e-13 seq31 87.8 1e-12 seq6 86.0 5e-12 seq22 82.4 6e-11 >seq17 Length=7869039 Score = 100 bits (110), Expect = 2e-16 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||||||| | || ||||||||| ||||||||||| ||||| || Sbjct 3557862 AGACGGAGGACCAGATGCAAGGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGA 3557921 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||| |||||||| || || | ||||| || || | || ||| Sbjct 3557922 CCATCCTCGAGCTGCTTTCCGGCAAAAATTAGCCTTTGCTGGTCTGGGGGAATGCCCTCC 3557981 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT-TCGCATTCGACCG 34087 || ||| ||||||| ||| | | | ||| | |||||| || | || ||| | | Sbjct 3557982 TTATCCTGAATTTTTGCCTTGACGTTA-TCAATCGTATCAG-AGCTCTCAACTTCAAGAG 3558039 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | ||||||||||||||||| || || ||||||||||||||| Sbjct 3558040 TGATTGTTTTTCCGGTTAGAGTCTTGACAAAGATTTGCATT 3558080 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | ||| || || || || ||||| ||| ||||||||||||||| ||||| Sbjct 3556709 GAAACCACCACGCAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATC 3556768 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| || | || || | ||||| || ||||| || || | ||||||||| Sbjct 3556769 AGCCAATGTGCGACCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGG 3556828 Query 34017 CGGCACGCTCTCTTTGTC 34034 || | | ||||||||| Sbjct 3556829 TGGGATCCCCTCTTTGTC 3556846 >seq143 Length=1536321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||| || ||||| || || || ||| ||||||||| ||||||||||| | Sbjct 384817 ACCTCCCCTCAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC-GG 384875 Query 33960 CAATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||| ||| || |||| || | |||||||||||| || || || |||||||| || Sbjct 384876 CAAGGGTCCTGC-CGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGG 384934 Query 34018 GGCACGCTCTCTTTGTCC 34035 || | || ||| |||||| Sbjct 384935 GGGATGCCCTCCTTGTCC 384952 >seq65 Length=3230173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || || |||||||| || ||| ||||||||| ||||||||||||||| Sbjct 2676800 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 2676859 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | || |||| |||||| || ||||| || || |||||||| || Sbjct 2676860 AAGGTTCGGCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTC 2676912 >seq31 Length=5807843 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || || |||||||| || ||| ||||||||| ||||||||||||||| Sbjct 4127516 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 4127457 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | || || | |||||| || ||||| || || |||||||| || Sbjct 4127456 AAGGTTCGGCCATCCTCTAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTC 4127404 >seq6 Length=10738081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || || |||||||||||||| || ||||| || |||||||| ||| Sbjct 270638 CCTCCTCTGAGACGAAGAACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCC 270697 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||| || || || || ||||| |||||||| || Sbjct 270698 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGG 270757 Query 34021 ACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 270758 ATGCCCTCTTTGTCC 270772 >seq22 Length=7127660 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || || |||||||| || ||| ||||||||| ||||||||||||||| Sbjct 3801404 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 3801345 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | || || | ||| || || ||||| || || |||||||| || Sbjct 3801344 AAGGTTCGGCCATCCTCTAGTTGTTTACCAGCAAAGATAAGCCGCTGCTGGTC 3801292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397044964369606