Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 9e-14 >seq6 Length=10738081 Score = 93.3 bits (102), Expect = 9e-14 Identities = 172/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || ||| |||| | | ||||| || |||| ||| | ||| ||| | |||||||| | Sbjct 5633864 GTGAAAGGAATCGTTGCGGAAGCGGTGGAAATCGAGAGGGAGTTCGTATGCGACGCATTA 5633923 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 ||||| | | | || |||||| |||| || ||| | ||||||||||| ||||| ||| Sbjct 5633924 CCATGTGCGTTAGTGGGAATGAACGCTGATCTGATGAGTCAGTACATCGAGTTCGTGGCC 5633983 Query 243613 GACCGCATTTTCATCGCGC--TTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTT 243669 || | || | | | || | || || | ||||| | ||||| ||||||| ||| Sbjct 5633984 GATAG--GTTGCTTGGAGCCTTGGGATACG-GAAAGATATACAATGTTCAGAACCCTTTT 5634040 Query 243670 GCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGT 243729 | | |||||| | ||||| | |||||||| || || ||||| || || || || | Sbjct 5634041 GATTGGATGGAGTTGATTTCTTTACAAGGGAAGACCAATTTCTTTGAGAAACGGGTTGGC 5634100 Query 243730 GATTATCA 243737 || ||||| Sbjct 5634101 GACTATCA 5634108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102829087268050