Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq4 91.5 2e-13 seq257 82.4 9e-11 >seq8 Length=10307871 Score = 107 bits (118), Expect = 2e-18 Identities = 345/526 (66%), Gaps = 11/526 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||||| ||||||||||| || || ||||| | ||| ||| |||||| Sbjct 4255822 GTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAGCTCCAT 4255881 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGAGGAGAC 125876 ||||||| || |||| ||| | || || | ||||| ||| | || Sbjct 4255882 CCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACC-GAGCAAAC 4255940 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | ||| |||| || |||| |||| ||| ||||||| || | | || Sbjct 4255941 GATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAACGCAC 4256000 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || | ||||| | | |||| || |||| || ||||| || || || || | | Sbjct 4256001 ACGGCAATGCGTCGCACACGAACTCCCTCTCGATGTCCACTGCGTCGGCAACAATTCCCT 4256060 Query 125997 -GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 126054 || | | ||| | | || | | | ||| || | |||| |||| ||| || Sbjct 4256061 TGACTCGC-TCCTCACTCAGTTTCTGCCTCAACAACTCGTAGAGCAGACACGCGAAA-TC 4256118 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| || |||||||| | ||||| | || || ||||| | || ||||| || Sbjct 4256119 GCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCATCAG 4256178 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || ||||||||||||||||| |||||||| || || |||||||| || ||||| || Sbjct 4256179 GCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCTCGAC 4256238 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCAAACCACTTCA 126233 || ||||| || | || ||||| || ||||| || || ||| | ||| | | Sbjct 4256239 GCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAAC----CGTCGATCCATTGGA 4256294 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||||| || |||||| | | || |||||||||| ||| || Sbjct 4256295 GGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGC 4256340 >seq4 Length=11052854 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || |||||||||||| || | ||| || || ||||| ||||| || |||| Sbjct 7390685 GCAAAGTCGCAGTGGAGACCCTCATCTCTGGAAATAAGCTCATTTGAGAATGTCAATCCT 7390744 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 |||||||| |||| ||| |||| ||||||||| ||||| ||| | |||||||| Sbjct 7390745 GGCATGAGTCCCCTCTTTTTCAGCCAGAAAATTGCACA----GAAGCTGAGAAGAA 7390796 >seq257 Length=623575 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||||||||| | |||||||||||||||||||||||||| || | || || || || Sbjct 427346 ATAGATATTAGAGGTGTATGGCTCAAAGCACTCATTGTTGCCAAGAATCTGACTAGTTGA 427287 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGG 114028 ||||||||||||||||| | |||||| Sbjct 427286 AGCTGTGGGCATGGGTGCTACAAGAAGG 427259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326696687240