Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq50 98.7 1e-15 seq22 98.7 1e-15 seq143 95.1 1e-14 seq66 87.8 2e-12 seq6 87.8 2e-12 seq97 86.0 6e-12 seq17 84.2 2e-11 seq31 82.4 8e-11 seq30 82.4 8e-11 >seq50 Length=4141196 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | || | |||||||||||| || |||| Sbjct 1513822 GATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCTACCGTCCTCGAGTTGCTTTCCGGCG 1513881 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | |||||| ||||||||||| ||||| || ||||| ||| || || | Sbjct 1513882 AAGATCAAACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 1513941 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||| ||||| | || | || || || |||| || || Sbjct 1513942 TTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAATGTCTTG 1514001 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 1514002 ACAAAAATCTGCAT 1514015 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| ||| || || | | | |||||||| |||||||||||||| | Sbjct 1513333 CCCCCACGTAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCC 1513392 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || ||||| || | |||| || | ||| ||||| || || Sbjct 1513393 AAGGTGCGGCCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCTGGTGGG 1513452 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || |||| || | ||| |||| ||||| Sbjct 1513453 ATACCCTCCTTGTC-CTGAATCTTGGCCTTCACATTG-TCGATGGTATCGGAGCTCTCCA 1513510 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| || ||||| || || ||||||||||| Sbjct 1513511 CCTCCAATGTGATGGTCTTACCGGTAAGAGTCTTCACGAAAATCTGCAT 1513559 >seq22 Length=7127660 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| || | ||| | ||| | | | |||||||| || |||||||| || | Sbjct 3801404 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 3801345 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||| | | |||| || ||||| ||||| || || Sbjct 3801344 AAGGTTCGGCCATCCTCTAGTTGTTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGGGGG 3801285 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | |||| || | ||||||| || || Sbjct 3801284 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTG-TCAATAGTGTCGGAGCTTTCAAC 3801226 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || ||||| || |||||||||||||| Sbjct 3801225 CTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAAATCTGCAT 3801178 >seq143 Length=1536321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | |||| ||||| ||||||||||||||| | Sbjct 384362 CCACCACGCAGACGCAGCACCAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCC 384421 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || ||||| || | |||| || | ||| |||||||| || Sbjct 384422 AAGGTTCGGCCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 384481 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || |||| | || | ||||||| ||| ||| Sbjct 384482 ATACCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCGATCGTGTCGGAACTCTCTACC 384541 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || || ||||||||||| Sbjct 384542 TCCAGGGTGATAGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 384588 >seq66 Length=3234583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | || | || ||||| ||||| || | | Sbjct 1444526 GACTCCTTTTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTCGAGCTGTTTTCCAGCA 1444585 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || |||||||||||||| ||||| || ||||| ||||| ||| | || | || | Sbjct 1444586 AAAATGAGACGCTGTTGGTCGGGAGGAATCCCTTCCTTGTC-CTGAATCTTGGCCTTCAC 1444644 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | ||| || ||||| | || | ||| || || || || ||||| Sbjct 1444645 ATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCTGTTAGGGTTTT 1444704 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 1444705 CACGAAGATTTGCAT 1444719 >seq6 Length=10738081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| | ||| | | || || || || || ||||| ||| | Sbjct 270638 CCTCCTCTGAGACGAAGAACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCC 270697 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| || || || || || ||||| Sbjct 270698 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGG 270757 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| || || | ||||| | | |||||| | ||||| || Sbjct 270758 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTGT-CGATGGTGTCTGAGGACTCAAC 270816 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | ||||| ||||| || |||||||| || |||||||||||| Sbjct 270817 CTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTTACGAAGATCTGCATGGCT 270868 >seq97 Length=2389559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || |||||||| || || || ||||| ||||| || || | Sbjct 872849 TTGATTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGACCATCCTCAAGTTGCTTCCCAG 872908 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT- 138537 | | || || | |||||||||||||| ||||| |||||||| ||| | || | ||| Sbjct 872909 CAAAAATAAGCCTTTGTTGGTCCGGAGGGATACCCTCTTTGTC-CTGAATCTTGGCTTTC 872967 Query 138538 -AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||| || | ||||||||| | || | || || || |||| || Sbjct 872968 ACATTG-TCAATGGTATCAGAGCTCTCCACCTCAAGTGTGATAGTCTTGCCTGTCAATGT 873026 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 873027 CTTCACAAAAATCTGCAT 873044 >seq17 Length=7869039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || ||||| || |||||||| || Sbjct 3557397 CCCCCACGAAGACGAAGTACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGCA 3557456 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | |||| || | ||| ||||| || || Sbjct 3557457 AGGGTCCGACCATCCTCAAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 3557516 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| ||| |||| |||| || | || || | ||| || Sbjct 3557517 ATCCCTTCTTTGTCCTGGATCTTTGCCTTTACATTG-TCAATTGTATCAGAGCTCTCAAC 3557575 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||||||||| || || || |||||||| Sbjct 3557576 CTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 3557623 >seq31 Length=5807843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| ||||| || || || ||| || ||| ||||| ||||| || || | | || Sbjct 4128384 TCCTTCTGAATATTATAATCTGTCAACGTTCGCCCATCCTCAAGTTGCTTTCCAGCAAAG 4128325 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTG 138542 || || | ||| || |||||||| || ||||||||||| ||| || ||| | |||| Sbjct 4128324 ATGAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTG 4128265 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGA-----CCGTCAGCGTTTTACCAGTCAGAGTT 138597 || | |||||| | ||||||||| | || | ||||| || || ||||| Sbjct 4128264 -TCTATGGTGTCAGAACTCTCCACCTCCAGTGTTATGTTATGGTTTTCCCTGTAAGAGTC 4128206 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 4128205 TTCACAAAGATCTGCAT 4128189 >seq30 Length=5940761 Score = 82.4 bits (90), Expect = 8e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | ||||| || |||||||||||||| | | Sbjct 3345474 CCGCCACGAAGACGGAGGACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTC-CGC 3345532 Query 138448 ATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || |||| ||||| ||||| || |||| | |||| || | ||| || || || | Sbjct 3345533 A-AGGGTGCGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCAGGTG 3345591 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTC 138563 | || || |||||||| ||| | || | ||| |||| || | ||| || | ||| Sbjct 3345592 GGATCCCCTCTTTGTC-CTGAATCTTAGCCTTAACATTG-TCTATGGTATCAGAGCTCTC 3345649 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| | || | ||| || || |||| || || || || |||||||| Sbjct 3345650 CACCTCCAGTGTGATCGTCTTCCCTGTCAAGGTCTTCACGAAGATCTGCAT 3345700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496240049582160