Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq37 120 2e-22 seq22 116 3e-21 seq66 111 1e-19 seq31 107 1e-18 seq65 102 6e-17 seq97 100 2e-16 seq50 91.5 1e-13 seq30 86.0 4e-12 >seq37 Length=4974474 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || ||||| || || |||||||| || |||| | |||||| Sbjct 2662731 ACCAAGTGGAGGGTGGATTCTTTCTGAATATTGTAATCAGCCAGTGTTCTTCCATCTTCT 2662790 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | ||||| ||||| |||||||| ||||| || Sbjct 2662791 AGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGAAGGAATTCCCTCCTTATCCTGG 2662850 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||||||| ||| | ||||||||||| | | || || ||||| ||||||||||| Sbjct 2662851 ATCTTTGCTTTT-ACATTGTCTATAGTATCAGAACTCTCCACTTCTAAAGTAATGGTTTT 2662909 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| |||||||| || || Sbjct 2662910 CCCAGTCAGTGTTTTGACAAAAATCTGAAT 2662939 >seq22 Length=7127660 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | ||||| | ||| | ||| ||||| || || || || ||||||||||| || Sbjct 3801404 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 3801345 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||| | || |||| |||||| ||||| | || | ||||| ||||| || Sbjct 3801344 AAGG-TTCGGCCATCCTCTAGTTGTTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGGGG 3801286 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| |||||| || ||| | || ||||| ||| |||| || Sbjct 3801285 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 3801226 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| ||||| || |||||||| ||||| Sbjct 3801225 CTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAAATCTGCAT 3801178 >seq66 Length=3234583 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| |||||||| ||| || |||| | ||||| | ||| Sbjct 1444517 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTCGAGCTGT 1444576 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | ||||||||||||| ||||| ||||||||||| ||| ||| Sbjct 1444577 TTTCCAGCAAAAATGAGACGCTGTTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTG 1444636 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||| || |||| ||| || || || ||||| Sbjct 1444637 GCCTTCACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCTGTT 1444696 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| || || |||||||| || Sbjct 1444697 AGGGTTTTCACGAAGATTTGCATCTT 1444722 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| ||| || |||| | ||||| | ||| Sbjct 1476012 TGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTCGAGCTGT 1476071 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | ||||||||||| ||||| ||||||||||| ||| ||| Sbjct 1476072 TTTCCAGCAAAAATGAGGCGCTGTTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATCTTG 1476131 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||| || |||| ||| || || || ||||| Sbjct 1476132 GCCTTCACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCTGTT 1476191 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || |||||||| Sbjct 1476192 AGGGTTTTCACGAAGATTTGCAT 1476214 >seq31 Length=5807843 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | ||||| | ||| | ||| ||||| || || || || ||||||||||| || Sbjct 4127516 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 4127457 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||| | || |||| ||| || ||||| | || | ||||| ||||| || Sbjct 4127456 AAGG-TTCGGCCATCCTCTAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGGGG 4127398 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||||| |||||| || ||| | || ||||| ||| ||||| || Sbjct 4127397 GGTTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTATCAATAGTGTCGGAGTTTTCAAC 4127338 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| ||||| || ||||| || ||||| Sbjct 4127337 CTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 4127290 >seq65 Length=3230173 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | ||||| | ||| | ||| ||||| || || || || ||||||||||| || Sbjct 2676800 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 2676859 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||| | || || | ||| || ||||| | || | ||||| ||||| ||| Sbjct 2676860 AAGG-TTCGGCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGTGG 2676918 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| |||||| || ||| | || ||||| ||| |||| || Sbjct 2676919 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 2676978 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || ||||| || ||||| || ||||| Sbjct 2676979 CTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 2677026 >seq97 Length=2389559 Score = 100 bits (110), Expect = 2e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||||| || || ||||| |||||||| ||||||||||| Sbjct 873730 CCCCCTCTCAACCGAAGAACTAGGTGGAGTGTAGATTCTTTTTGAATGTTGTAATCAGCC 873789 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| || ||||| | ||||| | || ||||| || Sbjct 873790 AAAGTCCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGCTGGTCTGGGGGG 873849 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| |||||| ||| ||| | || || ||||| | | || || Sbjct 873850 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTATCAATTGTATCAGAACTCTCCACT 873909 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 || | || || || || ||||| || || || ||||| |||||||| | ||||| || Sbjct 873910 TCGAGAGTTATAGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCATCTGTGAAACAA 873967 >seq50 Length=4141196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || ||||| |||||||| ||| || |||| |||| || | ||| Sbjct 1513813 TGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCTACCGTCCTCGAGTTGC 1513872 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | ||||||||||| ||||| ||||| || |||||||| || ||| Sbjct 1513873 TTTCCGGCGAAGATCAAACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTG 1513932 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||| | || || || | ||| ||||| || || ||| Sbjct 1513933 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTGCCGGTC 1513992 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || |||||||| ||||| Sbjct 1513993 AATGTCTTGACAAAAATCTGCAT 1514015 >seq30 Length=5940761 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || || | ||| | ||| | ||| |||||||| || || || || |||||||| Sbjct 3346156 TGCCCCCACGAAGTCTAAGAACCAGATGCAGGGTAGACTCCTTCTGGATATTGTAATCAG 3346215 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | ||||| || || | || | | ||| ||||| || Sbjct 3346216 CAAGTGTCCGACCATCCTCGAGCTGTTTCCCGGCAAAGATTAGCCTCTGCTGGTCTGGTG 3346275 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| |||||| || ||| | || || ||||| | || | Sbjct 3346276 GGATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTATCAATTGTATCAGAGCTCTCAA 3346335 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | |||||||||||| || || ||||| || ||||| || |||||| Sbjct 3346336 CTTCAAGGGTAATGGTTTTTCCGGTGAGAGTCTTGACAAAGATCTGCATA 3346385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357376306358855