Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq50 114 1e-20 seq17 102 7e-17 seq30 95.1 1e-14 seq97 91.5 1e-13 seq65 82.4 7e-11 >seq50 Length=4141196 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || |||||||||||||| || || ||| | |||| || || || Sbjct 1513806 CACAAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCTACCGTCCTC 1513865 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||| ||| | ||||| || ||||||||||| ||||| || || || || || Sbjct 1513866 GAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 1513925 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | ||||||||| |||||| || || || | || | Sbjct 1513926 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCT 1513984 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||| | || || |||||||| |||||| Sbjct 1513985 TGCCGGTCAATGTCTTGACAAAAATCTGCATC 1514016 >seq17 Length=7869039 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || || ||||| ||||| || ||||| | || | ||| || Sbjct 3557871 ACCAGATGCAAGGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACCATCCTCG 3557930 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | | ||||||||| || |||||||| || ||||| ||| Sbjct 3557931 AGCTGCTTTCCGGCAAAAATTAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 3557990 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| |||| || | || | || || || ||| ||||| ||||| | ||||| Sbjct 3557991 ATTTTTGCCTTGA-CGTTATCAATCGTATCAGAGCTCTCAACTTCAAGAGTGATTGTTTT 3558049 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| || ||||| |||||||| Sbjct 3558050 TCCGGTTAGAGTCTTGACAAAGATTTGCAT 3558079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || || || |||||||||||||| || ||||| ||||| Sbjct 3557166 ATTCCACCACGGAGTCGGAGGACAAGGTGAAGCGTTGATTCCTTCTGAATATTGTAATCT 3557225 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| || | || | | ||||||||||| Sbjct 3557226 GCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGT 3557285 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || |||||||| ||| |||| || | |||||| || ||| Sbjct 3557286 GGAATTCCCTCCTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCA 3557345 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || | || || || || ||||| || || || || |||||| Sbjct 3557346 ACTTCAAGCGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCATC 3557396 >seq30 Length=5940761 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || |||| || || ||||| ||||| || ||||| Sbjct 3346383 ATACCCCCACGGAGACGGAGGACCAGGTGCAAGGTAGACTCCTTCTGGATGTTGTAATCT 3346442 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | ||||| | ||| ||||| || Sbjct 3346443 GCCAGGGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCTGGG 3346502 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| ||| |||| || | |||||||| ||| Sbjct 3346503 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCGGAGCTCTCA 3346562 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || ||||| ||||| || |||||||||||||| Sbjct 3346563 ACTTCAAGAGTGATTGTCTTTCCGGTGAGAGTCTTGACAAAAATTTGCAT 3346612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||||| || ||||||||||| || || || || | ||| | ||| || Sbjct 3345719 CACCAGATGCAATGTGGATTCCTTTTGTATGTTGTAGTCAGCCAAGGTGCGACCATCCTC 3345778 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || |||||| | |||||||| || || || || ||||| || || Sbjct 3345779 CAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTG 3345838 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| ||| || | || | || | ||| || || ||| || || ||||| | |||| Sbjct 3345839 AATCTTTGCCTTCA-CGTTGTCAATGGTATCTGAGCTCTCAACCTCTAGAGTGATGGTTT 3345897 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || |||||||| ||||| Sbjct 3345898 TCCCGGTCAGGGTCTTCACAAAAATCTGCAT 3345928 >seq97 Length=2389559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 ||||| || || || ||||| ||||| || || ||||| | || ||| || Sbjct 873748 ACTAGGTGGAGTGTAGATTCTTTTTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCA 873807 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| || | ||||||| ||||||||| || || || || || || ||||| Sbjct 873808 AGTTGCTTTCCAGCAAAGATCAATCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 873867 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | || || ||| ||| ||||||||||| | || || Sbjct 873868 ATTTTGGCTTTGACATTATCAATTGTATCAGAACTCTCCACTTCGAGAGTTATAGTCTTT 873927 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || ||||| ||||||||| Sbjct 873928 CCTGTGAGGGTCTTGACAAAGATTTGCATC 873957 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || |||||||| | || ||||| || ||||||||||| |||||||| || || Sbjct 872818 CCCCCACGGAGCCTAAGGACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCCGCC 872877 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | ||| || || || | || | | ||| |||||||| || Sbjct 872878 AGGGTGCGACCATCCTCAAGTTGCTTCCCAGCAAAAATAAGCCTTTGTTGGTCCGGAGGG 872937 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||| || ||||| || ||| | || | ||| || || ||| || Sbjct 872938 ATACCCTCTTTGTCCTGAATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACC 872997 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || ||||| || | || || |||||||| |||||| Sbjct 872998 TCAAGTGTGATAGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATC 873045 >seq65 Length=3230173 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | ||| | | || || || || || |||||||| || || || || || Sbjct 2676569 ATTCCACCTCTGAGACGGAGAACAAGGTGGAGAGTGGATTCCTTCTGAATGTTRTARTCA 2676628 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | ||| ||||| || | || | || ||||| || || Sbjct 2676629 GCCAGTGTCCTACCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGATCAGGA 2676688 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| || | || || ||| ||| Sbjct 2676689 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCAGAACTCTCA 2676748 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 2676749 ACCTCCARAGTAATGGTTTTCCCGGTTAGAGTCTTGACAAAGATTTGCAT 2676798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451982842905880