Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 seq6 104 3e-17 seq4 86.0 8e-12 seq257 82.4 9e-11 >seq8 Length=10307871 Score = 114 bits (126), Expect = 2e-20 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| | ||||| | || || ||||| | || ||||| || || Sbjct 4256122 GTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCATCAGGCC 4256181 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||||||||||| |||||||| || ||| |||||||| |||||||| || || Sbjct 4256182 GCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCTCGACGCA 4256241 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCG 127709 ||||| || | || ||||| || ||||| ||| || || | ||| | | | Sbjct 4256242 GGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAAC----CGTCGATCCATTGGAGGG 4256297 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| || |||||| | | || |||||||||| ||| || Sbjct 4256298 CCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGC 4256340 >seq6 Length=10738081 Score = 104 bits (114), Expect = 3e-17 Identities = 375/575 (65%), Gaps = 14/575 (2%) Strand=Plus/Minus Query 127223 AGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGAT 127281 ||||| | | ||||| || ||||| ||||| ||||| || |||||||| | | || Sbjct 5634115 AGCTTTCTGATAGTCGCCAACCCGTTTCTCAAAGAAATTGGTCTTCCCTTGTAAAGAAAT 5634056 Query 127282 ATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTT 127340 |||||| ||||||| ||||||| || | || || | | ||||| | Sbjct 5634055 CAACTCCATCCAATCAAAAGGGTTCTGAACATTGTATATCTTTCCGTATCCCAAGGC-TC 5633997 Query 127341 TGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGA 127400 || | | ||| | ||| |||| ||||||| | |||| |||| |||||| || | Sbjct 5633996 CAAGCAACCTATCGGCCACGAACTCGATGTACTGACTCATCAGATCAGCGTTCATTCCCA 5633937 Query 127401 TGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460 | |||||| | ||||| | | |||| || |||| || ||||| |||||| | Sbjct 5633936 CTAACGCACATGGTAATGCGTCGCATACGAACTCCCTCTCGATTTCCACCGCTTCCGCAA 5633877 Query 127461 CGATGGCGTGAA-TAG-TGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAG-AGTTCCA 127517 |||| | | | | | | | ||| | ||| | | ||| || | || || || Sbjct 5633876 CGATTCCTTTCACTCGCTCTTCACTCAGCTTCTGCTTCAAAAACTCGTATAGCAGG--CA 5633819 Query 127518 CAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 ||| || || ||| | |||||||| | || || | || || || || | | Sbjct 5633818 -AGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAACC 5633760 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | ||||| | || || |||||||||||||| ||||| ||||| |||||||||||| | Sbjct 5633759 CCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGCGCAAAAGCTGCCAGAGAAGAATA 5633700 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCA 127696 ||||||| || || ||||| || | |||||| ||||| |||| | | ||| ||| Sbjct 5633699 TCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTAATCC 5633640 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 ||| | | | |||||| || || || || | || |||| |||| || || | | Sbjct 5633639 AACGA----AGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTGA 5633584 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 || || || || || | || ||| |||||||| Sbjct 5633583 AACAGACGGTTTTTCTCGGCTGCATCCTTGATGTA 5633549 >seq4 Length=11052854 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || |||||||||||| || | ||| || || ||||| ||||| || || Sbjct 7390684 AGCAAAGTCGCAGTGGAGACCCTCATCTCTGGAAATAAGCTCATTTGAGAATGTCAATCC 7390743 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 127620 ||||||||| |||| ||| |||| ||||||||| ||||| || Sbjct 7390744 TGGCATGAGTCCCCTCTTTTTCAGCCAGAAAATTGCACAGAA 7390785 >seq257 Length=623575 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGG 115960 |||||| || | |||||||||||||||||||||||||| || |||| | | || || | Sbjct 427346 ATAGATATTAGAGGTGTATGGCTCAAAGCACTCATTGTTGCC-AAGAATCTGACTAGTTG 427288 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGG 115989 | ||||||||||||||||| | |||||| Sbjct 427287 AAGCTGTGGGCATGGGTGCTACAAGAAGG 427259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479569169480