Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq97 118 7e-22 seq65 89.7 4e-13 seq22 89.7 4e-13 >seq97 Length=2389559 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||||||||| || ||| || ||||| || |||| Sbjct 873042 CATC-CCACCACGTAGACGAAGCACCAAATGCAATGTAGATTCCTTCTGTATGTTGTAAT 873100 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||||| |||| |||| ||||| || ||||| ||||||| | | ||||||||| | Sbjct 873101 CGGCCAAAGTGCGTCCATCTTCCAACTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCAG 873160 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || ||||| || ||| || | | | | || |||| ||| | Sbjct 873161 GTGGAATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCTGAGCTCT 873220 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||| ||||||||| || ||||| || || || || || |||||||| Sbjct 873221 CTACCTCCAGAGTAATTGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCAT 873272 >seq65 Length=3230173 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| ||||| || |||| || | ||| ||||| |||| Sbjct 2675923 TTCCTTCTGAATATTATAATCCGCCAACGTTCGCCCATCCTCAAGTTGCTTCCCAGCAAA 2675982 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | | ||||||||||| || | ||| |||||||| || || ||| | | Sbjct 2675983 GATGAGCCTCTGCTGATCCGGAGGRATGCCCTCTTTGTCCTGGATCTTGGCTTTCACATT 2676042 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| ||||| | ||| ||||| |||| || || ||||| || || | ||| || || Sbjct 2676043 GTCTATGGTGTCAGAGCTCTCCACCTCCAGTGTTATGGTTTTCCCTGTAAGAGTCTTCAC 2676102 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 2676103 AAAGATCTGCAT 2676114 >seq22 Length=7127660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| ||||| || |||| || | ||| ||||| |||| Sbjct 3802227 TTCCTTCTGAATATTATAATCCGCCAACGTTCGCCCATCCTCAAGTTGCTTCCCAGCAAA 3802168 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | | ||||||||||| || | ||| |||||||| || || ||| | | Sbjct 3802167 GATGAGCCTCTGCTGATCCGGAGGRATGCCCTCTTTGTCCTGGATCTTGGCTTTCACATT 3802108 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| ||||| | ||| ||||| |||| || || ||||| || || | ||| || || Sbjct 3802107 GTCTATGGTGTCAGAGCTCTCCACCTCCAGTGTTATGGTTTTCCCTGTAAGAGTCTTCAC 3802048 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 3802047 AAAGATCTGCAT 3802036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347354346458099