Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 seq44 113 6e-20 seq172 95.1 2e-14 seq31 87.8 2e-12 >seq5 Length=10760127 Score = 138 bits (152), Expect = 1e-27 Identities = 240/339 (71%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | || || ||||| || || |||| ||||| |||||| | ||| Sbjct 10377439 TCAAGAATGTCTGCACGGTTGGTTGCTGCAATTACAATGATACCAGTGTTTCCCT--CAA 10377382 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| || |||| ||||||||||| |||||||||| ||||||||| || | Sbjct 10377381 AACCATCCATTTCAGTCAGAAGCTGGTTAAGGGTTTGTTCCCTCTCATCATTCCCT--CC 10377324 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | ||| ||| || |||||||||||||| | || || ||||| Sbjct 10377323 TCCAATTCCAGTTCCTCTTTGTCGTCCAACTGCATCAATCTCATCCACAAATACAATGCA 10377264 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || ||| || | | | |||| |||||||| || || || || || |||||| Sbjct 10377263 AGGAGCATTCTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAACACCA 10377206 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | || | || ||| |||||| | ||| || Sbjct 10377205 ACAAACATCTCAACAAACTCAGATCCAG-AGATGGAGAAGAATGGGACACCTGCTTCTCC 10377147 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || ||| ||||||||||| || || || || Sbjct 10377146 AGCAATTGCCTTGGCAAGAAGAGTCTTTCCGGTTCCAGG 10377108 >seq44 Length=4426639 Score = 113 bits (124), Expect = 6e-20 Identities = 199/285 (70%), Gaps = 19/285 (7%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| ||||| ||||||||||| || || |||| || ||||| | Sbjct 1904531 AAACCATCCATCTCCGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCGTCATTTCC---- 1904476 Query 16035 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| || ||| ||| || ||| | ||||||||||||||||||||||| || || Sbjct 1904475 --ACCTCCAAGCCCTGCTCCACGCTGCCTGCCCACGGCATCAATCTCATCAATAAACACA 1904418 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 16144 ||||| || | |||||| | || ||||| | ||||| || |||| || || Sbjct 1904417 ATGCA-GGGGGCTTTTCGACTTTGCCTTATCAAACAAGTCCCG--AACCCTTGACGCTCC 1904361 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 || || ||||||| || ||||| | || || | |||| || || || || || Sbjct 1904360 AACCCCCACAAACAATTCGACAAACTCTGATGCAGCACATGAGAAAAACGGCACCCCAGC 1904301 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| || |||| || ||||| ||||| || || || || || || Sbjct 1904300 TTCTCCGGCAACTGCACGGGCTAGAAGGGTTTTCCCGGTTCCAGG 1904256 >seq172 Length=1237761 Score = 95.1 bits (104), Expect = 2e-14 Identities = 247/375 (66%), Gaps = 14/375 (4%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| |||| ||||||||| || || || |||| ||||| || | | Sbjct 424953 AACCCATCCATCTCCGTCAGAAGCTGGTTGATTGTCTGCTCCCTCTCATCGTTTCCA--C 424896 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | ||||| | || ||| | |||||||||||||| |||||||| || || |||| Sbjct 424895 CTCCGAGCCCAGCCCCACGCTGCCTACCCACGGCATCAATTTCATCAATAAATACAATGC 424836 Query 16093 ATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 | || | || ||| || ||| || | ||||| || | | || || || Sbjct 424835 AGGGGGCCTTGGACTTT-----GCCTTTTCGAACAAGTCCCGAACCCTCGATGCTCCAAC 424781 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 || || |||| ||||||||| | | || | ||| || || || || || ||| Sbjct 424780 TCCTACGAACAACTCCACAAACTCCGACGCAGCACACGAGAAAAACGGCACTCCAGCTTC 424721 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 || |||| ||| ||||| | ||| ||||| || || || || || | | ||| Sbjct 424720 TCCAGCAACGGCACGGGCCAAAAGGGTCTTTCCAGTTCCAGGAGGTCCGACCAAGAGACA 424661 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| || || || || ||| | || || | || || | ||| | ||||| || Sbjct 424660 ACCTTTAGGGATTTTCGCTCCAAGTGCAGTATACTTGTCCGGGTTCTTTAAGAAATCAAC 424601 Query 16328 AATCTCTTCCAATTC 16342 || ||| | |||||| Sbjct 424600 AACCTCCTGCAATTC 424586 >seq31 Length=5807843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 247/368 (67%), Gaps = 11/368 (3%) Strand=Plus/Plus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCG--- 16029 |||| |||||||| ||| | | |||||||| ||| ||| ||||||||||| | Sbjct 393507 CAAATCCATCCATTTCTACAAGCAACTGGTTAAGAGTACTTTCACGTTCATCATTTGCAC 393566 Query 16030 CTGGCATACCACCAGCACTGCGTTGCT-TTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| | || || | | | ||||| |||| | |||||||||||||||||||| | Sbjct 393567 CTGAAAAGCCTCC-TCGCCCCCTTGCTCTTCCAATTGCATCAATCTCATCAATGAAAATT 393625 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACAC-GCTTGGCGCCCAC 16147 || | ||| | || | || || |||| | | || ||| | | ||| || || Sbjct 393626 ATACTAGGTGCACATTGTCTGGCTTCTGCAAACAAGTTCCTTACCCTGGATGG-TCCAAC 393684 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 |||||||||||||||| ||||| || | | | || | | || || ||| ||||| Sbjct 393685 CCCAACAAACATCTCCATAAAGTCTGAACCAG-ATATAGACAGAAAAGGTACACCAGATT 393743 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| || | ||| || ||||| ||||| || ||||| || || | || || | Sbjct 393744 CACCAGCTGTTGCTTTTGCAAGAAGTGTCTTCCCAGTACCAGGAGGGCCTACAAGAAGAG 393803 Query 16267 CACCTCGTGGAATCTTGGC-GCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 16325 ||||| ||||| || || ||| ||| | ||| ||| ||| | ||| || || | | Sbjct 393804 CACCTTTCGGAATTTTAGCTCCCAACTCCTCA-TATTTCTTAGGGTTCTTGAGGAAGTGC 393862 Query 16326 ACAATCTC 16333 |||| ||| Sbjct 393863 ACAAACTC 393870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620714443314160