Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 134 2e-26 seq44 118 1e-21 seq8 100 3e-16 seq172 98.7 1e-15 seq4 93.3 5e-14 seq257 87.8 2e-12 seq19 87.8 2e-12 seq31 84.2 3e-11 seq27 82.4 9e-11 >seq5 Length=10760127 Score = 134 bits (148), Expect = 2e-26 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | || || || || || || |||| ||||| |||||| | ||| Sbjct 10377439 TCAAGAATGTCTGCACGGTTGGTTGCTGCAATTACAATGATACCAGTGTTTCCCT--CAA 10377382 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| || |||| ||| ||||||| |||||||||| ||||||||| || | Sbjct 10377381 AACCATCCATTTCAGTCAGAAGCTGGTTAAGGGTTTGTTCCCTCTCATCATTCCCT--CC 10377324 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | ||| ||| || |||||||||||||| | || ||||| || Sbjct 10377323 TCCAATTCCAGTTCCTCTTTGTCGTCCAACTGCATCAATCTCATCCACAAATACAATGCA 10377264 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | |||||||| ||||| | || || |||||||| Sbjct 10377263 AGGAGCATTCTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAACACCAAC 10377204 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || ||| |||||| | ||| || | Sbjct 10377203 AAACATCTCAACAAACTCAGATCCAG-AGATGGAGAAGAATGGGACACCTGCTTCTCCAG 10377145 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || ||| ||||||||||| || || || || Sbjct 10377144 CAATTGCCTTGGCAAGAAGAGTCTTTCCGGTTCCAGG 10377108 >seq44 Length=4426639 Score = 118 bits (130), Expect = 1e-21 Identities = 198/283 (70%), Gaps = 15/283 (5%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 |||||||||||||| ||||| || |||||||| || || |||| || ||||| | Sbjct 1904531 AAACCATCCATCTCCGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCGTCATTTCC---- 1904476 Query 9342 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| || ||| ||| || ||| | ||||||||||||||||||||||| || ||| Sbjct 1904475 --ACCTCCAAGCCCTGCTCCACGCTGCCTGCCCACGGCATCAATCTCATCAATAAACACA 1904418 Query 9396 ATACATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || || | |||||| || | ||||| | || ||||||||| || || | Sbjct 1904417 ATGCA-GGGGGCTTTTCGACTTTGCCTTATCAAACAAGTCCCGAACCCTTGACGCTCCAA 1904359 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | || ||||||| || ||||| | || || | |||| || || || || || || Sbjct 1904358 CCCCCACAAACAATTCGACAAACTCTGATGCAGCACATGAGAAAAACGGCACCCCAGCTT 1904299 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || |||| || ||||| ||||| || || || || || || Sbjct 1904298 CTCCGGCAACTGCACGGGCTAGAAGGGTTTTCCCGGTTCCAGG 1904256 >seq8 Length=10307871 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| |||| || || | || |||||||| || ||| ||||| || || Sbjct 4256122 GTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCATCAGGCC 4256181 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || || ||||| ||||||||||| || ||||| || || Sbjct 4256182 GCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCTCGACGCA 4256241 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | |||||||| |||||||| Sbjct 4256242 GGCGAATGCGATCAGGCGCTCCGCGAAGGA 4256271 >seq172 Length=1237761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| |||| ||| ||||| || || || |||| ||||| || | | Sbjct 424953 AACCCATCCATCTCCGTCAGAAGCTGGTTGATTGTCTGCTCCCTCTCATCGTTTCCA--C 424896 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | ||||| | || ||| | |||||||||||||| |||||||| || ||||| | Sbjct 424895 CTCCGAGCCCAGCCCCACGCTGCCTACCCACGGCATCAATTTCATCAATAAATACAATGC 424836 Query 9400 ATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 | || | || ||| || |||| || | || |||||||| || || || Sbjct 424835 AGGGGGCCTTGGACTTT-----GCCTTTTCGAACAAGTCCCGAACCCTCGATGCTCCAAC 424781 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 || || |||| ||||||||| | | || | ||| || || || || || ||| Sbjct 424780 TCCTACGAACAACTCCACAAACTCCGACGCAGCACACGAGAAAAACGGCACTCCAGCTTC 424721 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||| ||| ||||| | ||| ||||| || || || || Sbjct 424720 TCCAGCAACGGCACGGGCCAAAAGGGTCTTTCCAGTTCCAGG 424679 >seq4 Length=11052854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||||||||||||||||| ||||||||| ||||||||||| | ||| Sbjct 7390685 GCAAAGTCGCAGTGGAGACCCTCATCTCTGGAAATAAGCTCATTTGAGAATGTCAATCCT 7390744 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 |||||||| |||| ||| |||| ||| |||| || ||||| Sbjct 7390745 GGCATGAGTCCCCTCTTTTTCAGCCAGAAAATTGCACAGAA 7390785 >seq257 Length=623575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || || || || |||||||||||||| ||||| | || ||| ||||| || || Sbjct 424623 TGAGGCCTCGGAGTCCCAGCATTGAAGAGAGTTGGAGAGGCATGAGTGAACCAACGCTGT 424564 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | |||||| | | ||||||||||||| ||| |||||| || | || Sbjct 424563 GACATCAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGGATTCCAACAGCA 424504 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| || || |||| | | | || | || || | | || || Sbjct 424503 ACCCTCATCAACATGTGCTGTGGCCTTTCTACAACCTTCCCCT-GAACCTTCAACAGGTA 424445 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | ||||||||||||| | ||| ||| || || | ||| |||| Sbjct 424444 GGATCTCTCAAGGGTTTTAAAACCGAAGAAATCATAGTCAAAGTC 424400 >seq19 Length=7695933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 8/112 (7%) Strand=Plus/Minus Query 170261 AAACTCCGATGAGTAGATGTTGGTCAACTTGGCACCATAGCCGTTGCGACCTCCCACAAT 170320 |||||| | |||| |||||||||||| ||| |||||||| || || |||||||| | Sbjct 557428 AAACTCGGTTGAGAAGATGTTGGTCAGCTTCGCACCATATCCATT----CCTCCCACCAG 557373 Query 170321 TC-TCTTCTT---TGTGTCATCATAATTTGTACTCGTAAGAAGATGCCCAAA 170368 || ||||||| ||| ||||| ||||| | ||||| | |||||||||||| Sbjct 557372 TCGTCTTCTTCACTGTATCATCGTAATTACTGCTCGTCAAAAGATGCCCAAA 557321 >seq31 Length=5807843 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/367 (66%), Gaps = 9/367 (2%) Strand=Plus/Plus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-- 9337 |||| |||||||| ||| | | ||||||| ||| ||| ||||||||||| || Sbjct 393507 CAAATCCATCCATTTCTACAAGCAACTGGTTAAGAGTACTTTCACGTTCATCATTTGCAC 393566 Query 9338 -TGGCATACCACCAGCACTGCGTTGCT-TTCCCACGGCATCAATCTCATCAATGAAGACA 9395 || | || || | | | ||||| |||| | |||||||||||||||||||| | Sbjct 393567 CTGAAAAGCCTCCT-CGCCCCCTTGCTCTTCCAATTGCATCAATCTCATCAATGAAAATT 393625 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 |||| ||| | || | ||| | |||| | | | ||||| | || || Sbjct 393626 ATACTAGGTGCACATTGTCTGGCTTCTGCAAACAAGTTCCTTACCCTGGATGGTCCAACC 393685 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 |||||||||||||||| ||||| || | | | || | | || || ||| |||||| Sbjct 393686 CCAACAAACATCTCCATAAAGTCTGAACCAG-ATATAGACAGAAAAGGTACACCAGATTC 393744 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| || | ||| || ||||| ||||| || ||||| || || | || || || Sbjct 393745 ACCAGCTGTTGCTTTTGCAAGAAGTGTCTTCCCAGTACCAGGAGGGCCTACAAGAAGAGC 393804 Query 9575 ACCCCGTGGAATCTTGGC-GCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633 ||| ||||| || || ||| ||| | ||| ||| ||| | |||||| || | || Sbjct 393805 ACCTTTCGGAATTTTAGCTCCCAACTCCTCA-TATTTCTTAGGGTTCTTGAGGAAGTGCA 393863 Query 9634 CAATCTC 9640 ||| ||| Sbjct 393864 CAAACTC 393870 >seq27 Length=6178458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || || ||||||||||| || |||| || || ||||| || ||| Sbjct 1665221 TGGGGCCTTGGAGTCCCTGCATTGAAGAGAGTGGGTGAAGCATGGGTGAACCAACGTTGA 1665162 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | |||||| | | | |||| ||||| || || |||||| || | | Sbjct 1665161 GACATCAAATGGTATGTTTTAATGGCAGATTCAATATCATCTTTGTGGATCCCAACAGTA 1665102 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| ||| || | || | | | || | || || | | ||||| Sbjct 1665101 ACCCTCATCAACATGTGTTGTGGCCTCTCTACAACCTTTCCCT-GAACCTTCAATAGATA 1665043 Query 107347 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | |||| || |||||||||| |||||||||| || | || |||| Sbjct 1665042 CGATCTT-TCGAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTC 1664998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954228739720