Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq3603 598 5e-166 seq74 168 8e-37 seq199 122 1e-22 >seq3603 Length=163330 Score = 598 bits (662), Expect = 5e-166 Identities = 730/993 (74%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||||||||| || Sbjct 1446 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1387 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| || Sbjct 1386 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1328 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 1327 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1268 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || |||||| | ||||| || || || Sbjct 1267 TATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGAT 1208 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| |||||||||||||| | | | | Sbjct 1207 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1148 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | | |||||| | | | | Sbjct 1147 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCG 1088 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 1087 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1028 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| ||||||| || |||||||||||||||||||||||||| Sbjct 1027 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAAT 968 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 967 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 908 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 907 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 848 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | ||||||| || || ||||| | |||||| || | || Sbjct 847 TTCCTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGG 788 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 787 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 728 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| ||||||||||| || | | | || ||||||||||| Sbjct 727 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 668 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 667 TGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAA 608 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | || || || || || |||||||| || || || | | ||| | ||| || Sbjct 607 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACAC 548 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | | ||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 547 TTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 488 Query 169450 TCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||| |||||| |||| ||| ||| Sbjct 487 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 455 >seq74 Length=3028681 Score = 168 bits (186), Expect = 8e-37 Identities = 275/395 (70%), Gaps = 1/395 (0%) Strand=Plus/Plus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| |||||||| | |||||| |||| || | || | || | | Sbjct 694359 CTGGGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACTACT 694418 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | || ||| ||||||| || |||||||||||||||||| |||| || Sbjct 694419 GTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGGATC 694478 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 | | | || |||||||||||| | |||||| | || || ||||||| |||||||| || Sbjct 694479 T-TAGTACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCACCCA 694537 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||||| ||| ||| ||||| || || |||||| || Sbjct 694538 TTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCATTGT 694597 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || ||||| ||| | ||||||| || || || || | | | | || | ||| Sbjct 694598 TCCTCGGTAACTTCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAAGGT 694657 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 || ||| || || ||||||| ||||||||||| | | ||||| || || || Sbjct 694658 TATGGATTCAGTTTAGGGAAAGAAACTTATAATATTGTAACCACCCATGGTTATTTTGGC 694717 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 | | |||||||| ||||| ||||||||||| || Sbjct 694718 GAACTGATCTTCCAATATGCTAGTTTCAACAATTC 694752 >seq199 Length=1013994 Score = 122 bits (134), Expect = 1e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 169259 TTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 169318 ||||||||||| | | || || ||| || | ||||| || || | |||||| | || Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 169319 ATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAG 169378 ||||| |||||| | || || || | || |||||||| || || || | | ||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 169379 ATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCAT 169438 | ||| | |||| ||| | | ||| | || ||||||||||||||||| |||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 169439 GAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 || ||||| |||||||||||||| ||||| |||| ||| ||| Sbjct 992422 GAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGA 992379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564416178961440